miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 210682 1.12 0.001918
Target:  5'- uCCAAGCGCAACGGCAAGGCGCCGCGGg -3'
miRNA:   3'- -GGUUCGCGUUGCCGUUCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 27587 0.86 0.103782
Target:  5'- cCCAaaAGCGCGGCGGCAcGGCGCCcCGGu -3'
miRNA:   3'- -GGU--UCGCGUUGCCGUuCCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 95971 0.84 0.129772
Target:  5'- cCCGgguuGGCGCAGCGGCGGucggcguccGGCGCCGCGa -3'
miRNA:   3'- -GGU----UCGCGUUGCCGUU---------CCGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 150315 0.83 0.150314
Target:  5'- -gGAGCGagacCGGCGGCGAGGaCGCCGCGGc -3'
miRNA:   3'- ggUUCGC----GUUGCCGUUCC-GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 169058 0.82 0.177984
Target:  5'- cUCGGGCGCGaggggcuccGCGGCGGcGGCGUCGCGGc -3'
miRNA:   3'- -GGUUCGCGU---------UGCCGUU-CCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 90623 0.8 0.230591
Target:  5'- cCCGcGCGCcgGGCGGCGcgacccGGCGCCGCGGc -3'
miRNA:   3'- -GGUuCGCG--UUGCCGUu-----CCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 75070 0.8 0.241463
Target:  5'- aCCGGGCgGCGACGuCGAGGCGCCGUuucGGg -3'
miRNA:   3'- -GGUUCG-CGUUGCcGUUCCGCGGCG---CC- -5'
8961 5' -58.3 NC_002512.2 + 113268 0.8 0.247057
Target:  5'- -gGGGgGCGGcCGGCGGGGCaGCCGCGGc -3'
miRNA:   3'- ggUUCgCGUU-GCCGUUCCG-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 5529 0.8 0.247057
Target:  5'- aCCGAGgucucccgccCGCGAcccCGGCGcGGCGCCGCGGa -3'
miRNA:   3'- -GGUUC----------GCGUU---GCCGUuCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 101420 0.79 0.270511
Target:  5'- uCCGAGgGCAcaGCGGCGGccGGCGgCGCGGc -3'
miRNA:   3'- -GGUUCgCGU--UGCCGUU--CCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 227218 0.79 0.276648
Target:  5'- aCCAGGagGCGGCGGaccggGAGGCGCgGCGGa -3'
miRNA:   3'- -GGUUCg-CGUUGCCg----UUCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 4537 0.79 0.289255
Target:  5'- -gAAGCgGCGACGGUGAGGCGgCGCGa -3'
miRNA:   3'- ggUUCG-CGUUGCCGUUCCGCgGCGCc -5'
8961 5' -58.3 NC_002512.2 + 12383 0.79 0.289255
Target:  5'- cCCGAGCucgccuucggGCGGCGGCGGcGGCGCCG-GGa -3'
miRNA:   3'- -GGUUCG----------CGUUGCCGUU-CCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 114012 0.78 0.295725
Target:  5'- gCCGucGGCcccGCAGCGGCAccGGGCGCgGUGGa -3'
miRNA:   3'- -GGU--UCG---CGUUGCCGU--UCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 6342 0.78 0.295725
Target:  5'- aCCGGGCGCGG-GGCcGGcGgGCCGCGGg -3'
miRNA:   3'- -GGUUCGCGUUgCCGuUC-CgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 32843 0.78 0.301644
Target:  5'- cCCAGGCuGCAggaggugACGGUgccguGGGUGCCGCGGu -3'
miRNA:   3'- -GGUUCG-CGU-------UGCCGu----UCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 211315 0.78 0.302308
Target:  5'- uCCGAGCGCAucgUGGCGguccgggcccGGGCGCUGgGGg -3'
miRNA:   3'- -GGUUCGCGUu--GCCGU----------UCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 180309 0.78 0.322729
Target:  5'- aCAGGCGCAGCGGCGucgucAGGUcccGCUGCGc -3'
miRNA:   3'- gGUUCGCGUUGCCGU-----UCCG---CGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 103452 0.78 0.322729
Target:  5'- uCCGAGCGCGgguccgaggacGCGGCucGGGUcucggcggcgGCCGCGGa -3'
miRNA:   3'- -GGUUCGCGU-----------UGCCGu-UCCG----------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 104864 0.78 0.322729
Target:  5'- aCCucGCGCAGCGGgc-GGCGCCGaCGGc -3'
miRNA:   3'- -GGuuCGCGUUGCCguuCCGCGGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.