miRNA display CGI


Results 1 - 20 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 110748 0.66 0.921558
Target:  5'- gCAGGCGgaagGACGGCucGGCGugaucCCGCGc -3'
miRNA:   3'- gGUUCGCg---UUGCCGuuCCGC-----GGCGCc -5'
8961 5' -58.3 NC_002512.2 + 128284 0.66 0.916173
Target:  5'- gCCGGGC-CGACGGCcgcccgcaCGaCCGCGGg -3'
miRNA:   3'- -GGUUCGcGUUGCCGuucc----GC-GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 126441 0.66 0.916173
Target:  5'- gCCcGGCcgGCGACGGC--GGCGgCCGCc- -3'
miRNA:   3'- -GGuUCG--CGUUGCCGuuCCGC-GGCGcc -5'
8961 5' -58.3 NC_002512.2 + 210682 1.12 0.001918
Target:  5'- uCCAAGCGCAACGGCAAGGCGCCGCGGg -3'
miRNA:   3'- -GGUUCGCGUUGCCGUUCCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 104840 0.66 0.919965
Target:  5'- aCgAGGCGgAagguaucgucccucACGGCGAccucGGCcCCGCGGg -3'
miRNA:   3'- -GgUUCGCgU--------------UGCCGUU----CCGcGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 226749 0.66 0.91943
Target:  5'- aCCGGGCuccggccggacgacGCGGagGGCGAGGacgucucgggcgaCGCCGUGGu -3'
miRNA:   3'- -GGUUCG--------------CGUUg-CCGUUCC-------------GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 168995 0.66 0.916173
Target:  5'- aCCGAGCggucgcgcgccgGCu-CGGCGauccgggcGGGCGuCCGCGa -3'
miRNA:   3'- -GGUUCG------------CGuuGCCGU--------UCCGC-GGCGCc -5'
8961 5' -58.3 NC_002512.2 + 155732 0.66 0.916173
Target:  5'- cCCGAGCGgAcccuCGGCuacguGGCG-UGCGGc -3'
miRNA:   3'- -GGUUCGCgUu---GCCGuu---CCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 224974 0.66 0.916173
Target:  5'- cCCGcuGgGCGGCGGCGGcGGCGCCc--- -3'
miRNA:   3'- -GGUu-CgCGUUGCCGUU-CCGCGGcgcc -5'
8961 5' -58.3 NC_002512.2 + 157012 0.66 0.916173
Target:  5'- cCCGAgccccGCGaCAACGGCGAcGCGgCC-CGGa -3'
miRNA:   3'- -GGUU-----CGC-GUUGCCGUUcCGC-GGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 203147 0.66 0.916173
Target:  5'- aCCGuGGCGUAcaGCGGCGccGGCGaCGCGc -3'
miRNA:   3'- -GGU-UCGCGU--UGCCGUu-CCGCgGCGCc -5'
8961 5' -58.3 NC_002512.2 + 228392 0.66 0.916173
Target:  5'- uCC-GGCGUGAUcuguccgggGGaCGGGGCGCUGgGGg -3'
miRNA:   3'- -GGuUCGCGUUG---------CC-GUUCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 100058 0.66 0.921558
Target:  5'- uCCAu-CGCGACGG---GG-GCCGCGGg -3'
miRNA:   3'- -GGUucGCGUUGCCguuCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 198004 0.66 0.916173
Target:  5'- gCGAGCggGCGACGGacgGGGGCGagggaCGCGc -3'
miRNA:   3'- gGUUCG--CGUUGCCg--UUCCGCg----GCGCc -5'
8961 5' -58.3 NC_002512.2 + 92734 0.66 0.921558
Target:  5'- -gGGGCGCGcuCGGUccgauGGCGCCGacgaCGGg -3'
miRNA:   3'- ggUUCGCGUu-GCCGuu---CCGCGGC----GCC- -5'
8961 5' -58.3 NC_002512.2 + 103347 0.66 0.916173
Target:  5'- cCCGGG-GCgGACGGCAcggucgAGGUcagGCCGcCGGa -3'
miRNA:   3'- -GGUUCgCG-UUGCCGU------UCCG---CGGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 185235 0.66 0.916173
Target:  5'- -gGAaCGCGugGGCGAGaGCcucgaCCGCGGu -3'
miRNA:   3'- ggUUcGCGUugCCGUUC-CGc----GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 121158 0.66 0.916173
Target:  5'- gCCGGcCGCGGCccagGGCGAGGCGUUcuCGGa -3'
miRNA:   3'- -GGUUcGCGUUG----CCGUUCCGCGGc-GCC- -5'
8961 5' -58.3 NC_002512.2 + 221251 0.66 0.921029
Target:  5'- gCCGGcCGCGGCGgaagucgggggacGCGGGGCG-CGUGGa -3'
miRNA:   3'- -GGUUcGCGUUGC-------------CGUUCCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 189610 0.66 0.91943
Target:  5'- uUCGuGCGCGGCGGCcgcacgcgauCGUCGCGGu -3'
miRNA:   3'- -GGUuCGCGUUGCCGuucc------GCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.