miRNA display CGI


Results 21 - 40 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 207873 0.66 0.910573
Target:  5'- gCGAGUccgGgGACGGCuucuGGCGCUcucgGCGGu -3'
miRNA:   3'- gGUUCG---CgUUGCCGuu--CCGCGG----CGCC- -5'
8961 5' -58.3 NC_002512.2 + 126441 0.66 0.916173
Target:  5'- gCCcGGCcgGCGACGGC--GGCGgCCGCc- -3'
miRNA:   3'- -GGuUCG--CGUUGCCGuuCCGC-GGCGcc -5'
8961 5' -58.3 NC_002512.2 + 228392 0.66 0.916173
Target:  5'- uCC-GGCGUGAUcuguccgggGGaCGGGGCGCUGgGGg -3'
miRNA:   3'- -GGuUCGCGUUG---------CC-GUUCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 221251 0.66 0.921029
Target:  5'- gCCGGcCGCGGCGgaagucgggggacGCGGGGCG-CGUGGa -3'
miRNA:   3'- -GGUUcGCGUUGC-------------CGUUCCGCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 190069 0.66 0.904759
Target:  5'- aCGAGCugGCcGCGGCcggucagcGGGCucgGCUGCGGg -3'
miRNA:   3'- gGUUCG--CGuUGCCGu-------UCCG---CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 205017 0.66 0.910573
Target:  5'- aCGAcGCGCcuCGGUcGGG-GCCGCGu -3'
miRNA:   3'- gGUU-CGCGuuGCCGuUCCgCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 128284 0.66 0.916173
Target:  5'- gCCGGGC-CGACGGCcgcccgcaCGaCCGCGGg -3'
miRNA:   3'- -GGUUCGcGUUGCCGuucc----GC-GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 92734 0.66 0.921558
Target:  5'- -gGGGCGCGcuCGGUccgauGGCGCCGacgaCGGg -3'
miRNA:   3'- ggUUCGCGUu-GCCGuu---CCGCGGC----GCC- -5'
8961 5' -58.3 NC_002512.2 + 215755 0.66 0.910573
Target:  5'- cCCAAGgGCuguuucuccAGCGGCA--GCGCCGUc- -3'
miRNA:   3'- -GGUUCgCG---------UUGCCGUucCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 100058 0.66 0.921558
Target:  5'- uCCAu-CGCGACGG---GG-GCCGCGGg -3'
miRNA:   3'- -GGUucGCGUUGCCguuCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 121158 0.66 0.916173
Target:  5'- gCCGGcCGCGGCccagGGCGAGGCGUUcuCGGa -3'
miRNA:   3'- -GGUUcGCGUUG----CCGUUCCGCGGc-GCC- -5'
8961 5' -58.3 NC_002512.2 + 170369 0.66 0.910573
Target:  5'- gCCAGG-GC--CGuGCGcGGCGCCGCGc -3'
miRNA:   3'- -GGUUCgCGuuGC-CGUuCCGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 198004 0.66 0.916173
Target:  5'- gCGAGCggGCGACGGacgGGGGCGagggaCGCGc -3'
miRNA:   3'- gGUUCG--CGUUGCCg--UUCCGCg----GCGCc -5'
8961 5' -58.3 NC_002512.2 + 224974 0.66 0.916173
Target:  5'- cCCGcuGgGCGGCGGCGGcGGCGCCc--- -3'
miRNA:   3'- -GGUu-CgCGUUGCCGUU-CCGCGGcgcc -5'
8961 5' -58.3 NC_002512.2 + 168995 0.66 0.916173
Target:  5'- aCCGAGCggucgcgcgccgGCu-CGGCGauccgggcGGGCGuCCGCGa -3'
miRNA:   3'- -GGUUCG------------CGuuGCCGU--------UCCGC-GGCGCc -5'
8961 5' -58.3 NC_002512.2 + 104840 0.66 0.919965
Target:  5'- aCgAGGCGgAagguaucgucccucACGGCGAccucGGCcCCGCGGg -3'
miRNA:   3'- -GgUUCGCgU--------------UGCCGUU----CCGcGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 210101 0.66 0.904166
Target:  5'- uUCAAGUGCGACGuCGAGuacgcccugcccuGCGCCcGCGa -3'
miRNA:   3'- -GGUUCGCGUUGCcGUUC-------------CGCGG-CGCc -5'
8961 5' -58.3 NC_002512.2 + 90564 0.66 0.904759
Target:  5'- aCGAGgGCGAgGGCGAcGGC-CC-CGGu -3'
miRNA:   3'- gGUUCgCGUUgCCGUU-CCGcGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 191487 0.66 0.90711
Target:  5'- gCCGgacAGCGCGGCgaccGGCGcgcucccuuccuacgAGGagGCCGUGGg -3'
miRNA:   3'- -GGU---UCGCGUUG----CCGU---------------UCCg-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 181678 0.66 0.910573
Target:  5'- ---cGCGCcccGCGGCcGGGaucCCGCGGg -3'
miRNA:   3'- gguuCGCGu--UGCCGuUCCgc-GGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.