miRNA display CGI


Results 61 - 80 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 226690 0.75 0.465867
Target:  5'- gCCGGGCcgucgcccGCGGCGGCGucgagcgacGGGagGCCGCGGg -3'
miRNA:   3'- -GGUUCG--------CGUUGCCGU---------UCCg-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 181579 0.74 0.474764
Target:  5'- uCCGucUGCGGCGGCAGGG-GCgGCGGg -3'
miRNA:   3'- -GGUucGCGUUGCCGUUCCgCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 86863 0.74 0.474764
Target:  5'- gCGGGCGCAGCuG-AGGGCGCUGgGGa -3'
miRNA:   3'- gGUUCGCGUUGcCgUUCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 184998 0.74 0.474764
Target:  5'- -gGAGCGCuGCGGCccGGUGCCGCu- -3'
miRNA:   3'- ggUUCGCGuUGCCGuuCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 190947 0.74 0.480143
Target:  5'- cCCGGGCGCAcgcgggcgcccgccGCGGCGGccccuccGGCGCCGUc- -3'
miRNA:   3'- -GGUUCGCGU--------------UGCCGUU-------CCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 188912 0.74 0.481042
Target:  5'- gCGcGCGCGGucggagagucccggUGGCGGGGCGCgGCGGu -3'
miRNA:   3'- gGUuCGCGUU--------------GCCGUUCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 97457 0.74 0.483745
Target:  5'- -gGAGCGCAAcCGGUucuGGauCGCCGCGGu -3'
miRNA:   3'- ggUUCGCGUU-GCCGuu-CC--GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 227692 0.74 0.483745
Target:  5'- aCCGAGaCGaCGACGGCGGcGGgGgCGCGGu -3'
miRNA:   3'- -GGUUC-GC-GUUGCCGUU-CCgCgGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 225799 0.74 0.48736
Target:  5'- gCCGGGcCGCgGGCGGCcGGGUggccugggaccucgaGCCGCGGg -3'
miRNA:   3'- -GGUUC-GCG-UUGCCGuUCCG---------------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 155379 0.74 0.492806
Target:  5'- gUCGGG-GCGGCGGCGccggcGGGCGaUCGCGGa -3'
miRNA:   3'- -GGUUCgCGUUGCCGU-----UCCGC-GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 103671 0.74 0.493717
Target:  5'- aCGAGCGCcucgacgucgcagagGGCGGCGgacgcggcgggaggGGGCGCCGCc- -3'
miRNA:   3'- gGUUCGCG---------------UUGCCGU--------------UCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 130661 0.74 0.501946
Target:  5'- aCCAGauGCGCAcgacccacACGGC--GGCgGCCGCGGa -3'
miRNA:   3'- -GGUU--CGCGU--------UGCCGuuCCG-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 152454 0.74 0.501946
Target:  5'- aCGGGCGC-GCGGCGuugggAGGCGUCcCGGg -3'
miRNA:   3'- gGUUCGCGuUGCCGU-----UCCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 54249 0.74 0.501946
Target:  5'- aCGucCGCAGCGGCAGGGCgGCgGCGu -3'
miRNA:   3'- gGUucGCGUUGCCGUUCCG-CGgCGCc -5'
8961 5' -58.3 NC_002512.2 + 36673 0.74 0.501946
Target:  5'- cCCAGGCugccggGCAACGGCGAGcCGaagaCGCGGu -3'
miRNA:   3'- -GGUUCG------CGUUGCCGUUCcGCg---GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 95782 0.74 0.501946
Target:  5'- -gGGGCGUccgAGCGGU-AGGCGCCGgGGc -3'
miRNA:   3'- ggUUCGCG---UUGCCGuUCCGCGGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 24293 0.74 0.501946
Target:  5'- cCCGcGgGaCAGCGGCGGGGCGaaCUGCGGu -3'
miRNA:   3'- -GGUuCgC-GUUGCCGUUCCGC--GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 5874 0.74 0.505622
Target:  5'- cCCGGGCGUcguccGacucgucgcucguggACGGCGGGGCGC-GCGGg -3'
miRNA:   3'- -GGUUCGCG-----U---------------UGCCGUUCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 144117 0.74 0.510234
Target:  5'- uCCGAGuCGCGGucuaucuCGGCcAGGUcgGCCGCGGa -3'
miRNA:   3'- -GGUUC-GCGUU-------GCCGuUCCG--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 229543 0.74 0.511158
Target:  5'- gCCGGGgaGCcg-GGCGGGGCGCCgGCGGa -3'
miRNA:   3'- -GGUUCg-CGuugCCGUUCCGCGG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.