miRNA display CGI


Results 61 - 80 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 191487 0.66 0.90711
Target:  5'- gCCGgacAGCGCGGCgaccGGCGcgcucccuuccuacgAGGagGCCGUGGg -3'
miRNA:   3'- -GGU---UCGCGUUG----CCGU---------------UCCg-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 190069 0.66 0.904759
Target:  5'- aCGAGCugGCcGCGGCcggucagcGGGCucgGCUGCGGg -3'
miRNA:   3'- gGUUCG--CGuUGCCGu-------UCCG---CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 115871 0.66 0.904759
Target:  5'- gCCcGGUGCcGCuGCGGGGCcgacgGCgGCGGg -3'
miRNA:   3'- -GGuUCGCGuUGcCGUUCCG-----CGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 7244 0.66 0.904759
Target:  5'- gCCGGcCGUcGCGGCGGagcGGCGuCCGuCGGg -3'
miRNA:   3'- -GGUUcGCGuUGCCGUU---CCGC-GGC-GCC- -5'
8961 5' -58.3 NC_002512.2 + 142032 0.66 0.904759
Target:  5'- gCCGGGgGC--CGGCGAccCGCCGCGa -3'
miRNA:   3'- -GGUUCgCGuuGCCGUUccGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 53206 0.66 0.904759
Target:  5'- aCAAG-GCGACGcGCcagucccagGAGGCGCgcugGCGGg -3'
miRNA:   3'- gGUUCgCGUUGC-CG---------UUCCGCGg---CGCC- -5'
8961 5' -58.3 NC_002512.2 + 18136 0.66 0.904759
Target:  5'- cCCGcAGCGCccgGGCc--GCGUCGCGGg -3'
miRNA:   3'- -GGU-UCGCGuugCCGuucCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 90564 0.66 0.904759
Target:  5'- aCGAGgGCGAgGGCGAcGGC-CC-CGGu -3'
miRNA:   3'- gGUUCgCGUUgCCGUU-CCGcGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 72021 0.66 0.904759
Target:  5'- gCCAGGcCGCccuggAugGGCAGcuuGCGCUGCGc -3'
miRNA:   3'- -GGUUC-GCG-----UugCCGUUc--CGCGGCGCc -5'
8961 5' -58.3 NC_002512.2 + 226981 0.66 0.904759
Target:  5'- uUAGGgGCGGCgucuuagcagagGGUGAGGCGgCGCGa -3'
miRNA:   3'- gGUUCgCGUUG------------CCGUUCCGCgGCGCc -5'
8961 5' -58.3 NC_002512.2 + 183500 0.66 0.904759
Target:  5'- gCCuacGGcCGCGAgGGgGAGGCcguccucgccugGCUGCGGa -3'
miRNA:   3'- -GGu--UC-GCGUUgCCgUUCCG------------CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 211355 0.66 0.904759
Target:  5'- aCGcGCGCGGCcugaccgcccGGCGcGGCauGCUGCGGa -3'
miRNA:   3'- gGUuCGCGUUG----------CCGUuCCG--CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 110889 0.66 0.904759
Target:  5'- -gAGGCGCu-UGGCgGAGGCcaGCCGCaGGc -3'
miRNA:   3'- ggUUCGCGuuGCCG-UUCCG--CGGCG-CC- -5'
8961 5' -58.3 NC_002512.2 + 31665 0.66 0.904166
Target:  5'- gCGGGCGCGgccgugguggcggACGGgGAGGaggaCGCGGa -3'
miRNA:   3'- gGUUCGCGU-------------UGCCgUUCCgcg-GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 210101 0.66 0.904166
Target:  5'- uUCAAGUGCGACGuCGAGuacgcccugcccuGCGCCcGCGa -3'
miRNA:   3'- -GGUUCGCGUUGCcGUUC-------------CGCGG-CGCc -5'
8961 5' -58.3 NC_002512.2 + 96609 0.66 0.90117
Target:  5'- aCCgGAGCGCGgagacgcgggggAgGGCGaggaaaccgcgaccgGGGCGCCGCc- -3'
miRNA:   3'- -GG-UUCGCGU------------UgCCGU---------------UCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 81858 0.66 0.90117
Target:  5'- -gGAGCGuCGGCGGgaagcgacagaggccCAGGGagGCCGUGGu -3'
miRNA:   3'- ggUUCGC-GUUGCC---------------GUUCCg-CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 44598 0.66 0.900564
Target:  5'- uCCAggacguuGGCGUAGCGGUccaucauGGCGacgaccgaguagagaCCGCGGu -3'
miRNA:   3'- -GGU-------UCGCGUUGCCGuu-----CCGC---------------GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 220126 0.66 0.898735
Target:  5'- gCCAcGCGgGGCGGCGGGuccggcucCGCCGCc- -3'
miRNA:   3'- -GGUuCGCgUUGCCGUUCc-------GCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 228588 0.66 0.898735
Target:  5'- ---cGUGuCGGCGGC-AGGCGCCGgaccaGGu -3'
miRNA:   3'- gguuCGC-GUUGCCGuUCCGCGGCg----CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.