miRNA display CGI


Results 81 - 100 of 619 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8961 5' -58.3 NC_002512.2 + 82303 0.73 0.54866
Target:  5'- aCGGGCGUAGCgcugGGUguaGAGG-GCCGCGGg -3'
miRNA:   3'- gGUUCGCGUUG----CCG---UUCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 90123 0.73 0.54866
Target:  5'- gCGGGCGCccgguGC-GCGAGG-GCCGCGGa -3'
miRNA:   3'- gGUUCGCGu----UGcCGUUCCgCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 33633 0.73 0.54866
Target:  5'- gCCGAG-GCGAgaGGCGcgcgcGGGCGCgGCGGa -3'
miRNA:   3'- -GGUUCgCGUUg-CCGU-----UCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 74 0.73 0.558176
Target:  5'- gCGGGCGCGAggaGGCGagAGGCGgCGgGGg -3'
miRNA:   3'- gGUUCGCGUUg--CCGU--UCCGCgGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 229478 0.73 0.558176
Target:  5'- gCGGGCGCGAggaGGCGagAGGCGgCGgGGg -3'
miRNA:   3'- gGUUCGCGUUg--CCGU--UCCGCgGCgCC- -5'
8961 5' -58.3 NC_002512.2 + 11013 0.73 0.558176
Target:  5'- -aGGGCGCGcACGGCGucGGUGCCcCGGg -3'
miRNA:   3'- ggUUCGCGU-UGCCGUu-CCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 84546 0.73 0.561995
Target:  5'- gUCGGGCGgcGCGGCGAGGCGCuCgaccucgacguaguuGCGGa -3'
miRNA:   3'- -GGUUCGCguUGCCGUUCCGCG-G---------------CGCC- -5'
8961 5' -58.3 NC_002512.2 + 58997 0.73 0.539196
Target:  5'- uCCAGGCgGCcguCGGCGAGGaGCCGCu- -3'
miRNA:   3'- -GGUUCG-CGuu-GCCGUUCCgCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 54039 0.73 0.529787
Target:  5'- uCCAggaagauaacGGCGaGGCGGCAggAGGCGCCaCGGa -3'
miRNA:   3'- -GGU----------UCGCgUUGCCGU--UCCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 4893 0.73 0.529787
Target:  5'- -gGAGCgGCGACGGgAagaGGGCGCCGCc- -3'
miRNA:   3'- ggUUCG-CGUUGCCgU---UCCGCGGCGcc -5'
8961 5' -58.3 NC_002512.2 + 97457 0.74 0.483745
Target:  5'- -gGAGCGCAAcCGGUucuGGauCGCCGCGGu -3'
miRNA:   3'- ggUUCGCGUU-GCCGuu-CC--GCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 155379 0.74 0.492806
Target:  5'- gUCGGG-GCGGCGGCGccggcGGGCGaUCGCGGa -3'
miRNA:   3'- -GGUUCgCGUUGCCGU-----UCCGC-GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 24293 0.74 0.501946
Target:  5'- cCCGcGgGaCAGCGGCGGGGCGaaCUGCGGu -3'
miRNA:   3'- -GGUuCgC-GUUGCCGUUCCGC--GGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 54249 0.74 0.501946
Target:  5'- aCGucCGCAGCGGCAGGGCgGCgGCGu -3'
miRNA:   3'- gGUucGCGUUGCCGUUCCG-CGgCGCc -5'
8961 5' -58.3 NC_002512.2 + 36673 0.74 0.501946
Target:  5'- cCCAGGCugccggGCAACGGCGAGcCGaagaCGCGGu -3'
miRNA:   3'- -GGUUCG------CGUUGCCGUUCcGCg---GCGCC- -5'
8961 5' -58.3 NC_002512.2 + 152454 0.74 0.501946
Target:  5'- aCGGGCGC-GCGGCGuugggAGGCGUCcCGGg -3'
miRNA:   3'- gGUUCGCGuUGCCGU-----UCCGCGGcGCC- -5'
8961 5' -58.3 NC_002512.2 + 5874 0.74 0.505622
Target:  5'- cCCGGGCGUcguccGacucgucgcucguggACGGCGGGGCGC-GCGGg -3'
miRNA:   3'- -GGUUCGCG-----U---------------UGCCGUUCCGCGgCGCC- -5'
8961 5' -58.3 NC_002512.2 + 51185 0.74 0.511158
Target:  5'- gCCAGcaaCGCGGCGGCc--GCGCUGCGGg -3'
miRNA:   3'- -GGUUc--GCGUUGCCGuucCGCGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 2029 0.74 0.52044
Target:  5'- aCCAGGaggaGCGACaGCAGGGUgaucgGCUGCGGc -3'
miRNA:   3'- -GGUUCg---CGUUGcCGUUCCG-----CGGCGCC- -5'
8961 5' -58.3 NC_002512.2 + 42575 0.73 0.567737
Target:  5'- gCGGGCGCcgcgaggcgAGCGGCGGGGCGgacccgaagcCCGgGGg -3'
miRNA:   3'- gGUUCGCG---------UUGCCGUUCCGC----------GGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.