Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8962 | 3' | -59.6 | NC_002512.2 | + | 23138 | 0.69 | 0.64786 |
Target: 5'- gUUCCGc-GCGGGCGGCa-UCGCGUUCg -3' miRNA: 3'- -AAGGCcaUGCCUGUCGgcAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 207377 | 0.69 | 0.643949 |
Target: 5'- gUUCGGcguccccacgaugAUGGACGGCUGcugCGCGCUCa -3' miRNA: 3'- aAGGCCa------------UGCCUGUCGGCa--GCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 114475 | 0.7 | 0.628295 |
Target: 5'- --gUGGUGCuGGAUGGCCGUCaccGCGUUCu -3' miRNA: 3'- aagGCCAUG-CCUGUCGGCAG---CGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 91880 | 0.7 | 0.618513 |
Target: 5'- gUCCGGcGCGGGCGGCgG-CGCggcgcacggcccGCUCg -3' miRNA: 3'- aAGGCCaUGCCUGUCGgCaGCG------------CGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 92717 | 0.7 | 0.618513 |
Target: 5'- -gCC-GUACGGACGuCCGgggggCGCGCUCg -3' miRNA: 3'- aaGGcCAUGCCUGUcGGCa----GCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 108835 | 0.7 | 0.618513 |
Target: 5'- -cUCGGgcgGCGGGuaccCGGCCcagagGUCGCGCUCg -3' miRNA: 3'- aaGGCCa--UGCCU----GUCGG-----CAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 160824 | 0.7 | 0.60874 |
Target: 5'- -cCCGGcaccagcagGCGGGCGGCCGgcgGCGCUg -3' miRNA: 3'- aaGGCCa--------UGCCUGUCGGCag-CGCGAg -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 128671 | 0.7 | 0.60874 |
Target: 5'- -gCCGGaacccgGCGGACggGGCCGUCGUGaUCg -3' miRNA: 3'- aaGGCCa-----UGCCUG--UCGGCAGCGCgAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 192878 | 0.7 | 0.58925 |
Target: 5'- -cCCGG---GGACGcauauaagcGCCGUCGCGCUCc -3' miRNA: 3'- aaGGCCaugCCUGU---------CGGCAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 101595 | 0.7 | 0.58925 |
Target: 5'- -cCCGcggucGUGCGGGCGGCCGUCG-GCcCg -3' miRNA: 3'- aaGGC-----CAUGCCUGUCGGCAGCgCGaG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 118212 | 0.7 | 0.58925 |
Target: 5'- gUCUGGUGC-GACggGGCCcUCGUGCUCg -3' miRNA: 3'- aAGGCCAUGcCUG--UCGGcAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 218780 | 0.71 | 0.566015 |
Target: 5'- gUCCGGggacgaggccgagGCGGACGacaccGCCGUC-CGCUCc -3' miRNA: 3'- aAGGCCa------------UGCCUGU-----CGGCAGcGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 169109 | 0.71 | 0.550656 |
Target: 5'- cUCgCGGggcguuCGGucCGGUCGUCGCGCUCc -3' miRNA: 3'- aAG-GCCau----GCCu-GUCGGCAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 75565 | 0.71 | 0.541122 |
Target: 5'- -gCCGGgGCGGggccGCcGCCGUCGCGgUCg -3' miRNA: 3'- aaGGCCaUGCC----UGuCGGCAGCGCgAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 186012 | 0.72 | 0.512872 |
Target: 5'- gUCCGGcACcuGGAC-GCCugcGUCGCGCUCg -3' miRNA: 3'- aAGGCCaUG--CCUGuCGG---CAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 29677 | 0.72 | 0.512872 |
Target: 5'- cUCCGGcuccuCGGGC--UCGUCGCGCUCg -3' miRNA: 3'- aAGGCCau---GCCUGucGGCAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 126344 | 0.72 | 0.503589 |
Target: 5'- gUCCGGgACGGGCGcGCaCGaCGCGUUCa -3' miRNA: 3'- aAGGCCaUGCCUGU-CG-GCaGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 108590 | 0.72 | 0.503589 |
Target: 5'- gUUCCGG-GCGGAgAGCgGUCGCaaGUUCg -3' miRNA: 3'- -AAGGCCaUGCCUgUCGgCAGCG--CGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 134573 | 0.72 | 0.494379 |
Target: 5'- gUUCCGGUACGG-CGGCC--CGCGgUCc -3' miRNA: 3'- -AAGGCCAUGCCuGUCGGcaGCGCgAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 34893 | 0.73 | 0.449564 |
Target: 5'- gUUCGGUcggaGCGGACAGCCauggacGUCcuauGCGCUCg -3' miRNA: 3'- aAGGCCA----UGCCUGUCGG------CAG----CGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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