miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 3' -59.6 NC_002512.2 + 124959 0.66 0.830805
Target:  5'- -gCCGG-ACGaGGaGGCCGUCGCGgaCu -3'
miRNA:   3'- aaGGCCaUGC-CUgUCGGCAGCGCgaG- -5'
8962 3' -59.6 NC_002512.2 + 124640 0.67 0.765787
Target:  5'- aUCCGGgugcGCGGcGCGgcgcucacgcuguacGCCuUCGCGCUCa -3'
miRNA:   3'- aAGGCCa---UGCC-UGU---------------CGGcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 120314 0.78 0.225002
Target:  5'- -gCCGGUagcACGGACAgGCCGUCGCGUc- -3'
miRNA:   3'- aaGGCCA---UGCCUGU-CGGCAGCGCGag -5'
8962 3' -59.6 NC_002512.2 + 119101 0.69 0.696442
Target:  5'- ---aGGUGCGGGCGGCC-UCgGCGCa- -3'
miRNA:   3'- aaggCCAUGCCUGUCGGcAG-CGCGag -5'
8962 3' -59.6 NC_002512.2 + 119021 0.69 0.696442
Target:  5'- cUCCuGGUggACGGGcCGGCCGUCGUGggCc -3'
miRNA:   3'- aAGG-CCA--UGCCU-GUCGGCAGCGCgaG- -5'
8962 3' -59.6 NC_002512.2 + 118212 0.7 0.58925
Target:  5'- gUCUGGUGC-GACggGGCCcUCGUGCUCg -3'
miRNA:   3'- aAGGCCAUGcCUG--UCGGcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 114475 0.7 0.628295
Target:  5'- --gUGGUGCuGGAUGGCCGUCaccGCGUUCu -3'
miRNA:   3'- aagGCCAUG-CCUGUCGGCAG---CGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 111924 0.69 0.657628
Target:  5'- gUUCgGGUGcCGGaACAGCUccagGUCGgCGCUCa -3'
miRNA:   3'- -AAGgCCAU-GCC-UGUCGG----CAGC-GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 109951 0.66 0.830805
Target:  5'- -aCCGcGUGCGGG-GGCgaCGcCGCGCUCg -3'
miRNA:   3'- aaGGC-CAUGCCUgUCG--GCaGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 108835 0.7 0.618513
Target:  5'- -cUCGGgcgGCGGGuaccCGGCCcagagGUCGCGCUCg -3'
miRNA:   3'- aaGGCCa--UGCCU----GUCGG-----CAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 108590 0.72 0.503589
Target:  5'- gUUCCGG-GCGGAgAGCgGUCGCaaGUUCg -3'
miRNA:   3'- -AAGGCCaUGCCUgUCGgCAGCG--CGAG- -5'
8962 3' -59.6 NC_002512.2 + 107007 0.68 0.706042
Target:  5'- -gCCGGggucgGCcGAgAGCCGggCGCGCUCc -3'
miRNA:   3'- aaGGCCa----UGcCUgUCGGCa-GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 106213 0.67 0.762161
Target:  5'- aUCCGGUccGCGGccaugGCGGCgCG-CGCGCg- -3'
miRNA:   3'- aAGGCCA--UGCC-----UGUCG-GCaGCGCGag -5'
8962 3' -59.6 NC_002512.2 + 104773 0.69 0.696442
Target:  5'- -cCCGGU-CGGACGGCgCGUggcggggucCGCGCg- -3'
miRNA:   3'- aaGGCCAuGCCUGUCG-GCA---------GCGCGag -5'
8962 3' -59.6 NC_002512.2 + 103347 0.66 0.846457
Target:  5'- -cCCGGgGCGGACGGCacgGUCGaGgUCa -3'
miRNA:   3'- aaGGCCaUGCCUGUCGg--CAGCgCgAG- -5'
8962 3' -59.6 NC_002512.2 + 101595 0.7 0.58925
Target:  5'- -cCCGcggucGUGCGGGCGGCCGUCG-GCcCg -3'
miRNA:   3'- aaGGC-----CAUGCCUGUCGGCAGCgCGaG- -5'
8962 3' -59.6 NC_002512.2 + 98568 0.66 0.846457
Target:  5'- aUCCGGcgggcgccuCGGGCGGCggguCGUCcGCGCUg -3'
miRNA:   3'- aAGGCCau-------GCCUGUCG----GCAG-CGCGAg -5'
8962 3' -59.6 NC_002512.2 + 95242 0.66 0.838717
Target:  5'- cUCCGGagggggcgucCGGAgGGCCG-CGCgGCUCc -3'
miRNA:   3'- aAGGCCau--------GCCUgUCGGCaGCG-CGAG- -5'
8962 3' -59.6 NC_002512.2 + 92717 0.7 0.618513
Target:  5'- -gCC-GUACGGACGuCCGgggggCGCGCUCg -3'
miRNA:   3'- aaGGcCAUGCCUGUcGGCa----GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 91880 0.7 0.618513
Target:  5'- gUCCGGcGCGGGCGGCgG-CGCggcgcacggcccGCUCg -3'
miRNA:   3'- aAGGCCaUGCCUGUCGgCaGCG------------CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.