miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 3' -59.6 NC_002512.2 + 174360 0.66 0.814492
Target:  5'- -gCCGGgaUGCGGAUGGCCGagaaCGgGUUCu -3'
miRNA:   3'- aaGGCC--AUGCCUGUCGGCa---GCgCGAG- -5'
8962 3' -59.6 NC_002512.2 + 171833 0.66 0.85402
Target:  5'- aUCCGGUACcgcgGGACGGuCCGgcCGCGg-- -3'
miRNA:   3'- aAGGCCAUG----CCUGUC-GGCa-GCGCgag -5'
8962 3' -59.6 NC_002512.2 + 170115 0.69 0.686794
Target:  5'- -gCCGGUugGGAUAgGCCGUaggggucgUGUGCUg -3'
miRNA:   3'- aaGGCCAugCCUGU-CGGCA--------GCGCGAg -5'
8962 3' -59.6 NC_002512.2 + 169109 0.71 0.550656
Target:  5'- cUCgCGGggcguuCGGucCGGUCGUCGCGCUCc -3'
miRNA:   3'- aAG-GCCau----GCCu-GUCGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 160824 0.7 0.60874
Target:  5'- -cCCGGcaccagcagGCGGGCGGCCGgcgGCGCUg -3'
miRNA:   3'- aaGGCCa--------UGCCUGUCGGCag-CGCGAg -5'
8962 3' -59.6 NC_002512.2 + 156147 0.66 0.846457
Target:  5'- --aCGGcUACGGuagccagaAGCUGUCGCuGCUCg -3'
miRNA:   3'- aagGCC-AUGCCug------UCGGCAGCG-CGAG- -5'
8962 3' -59.6 NC_002512.2 + 155257 0.68 0.753024
Target:  5'- -cCCGGgccgucGCGcGGCGGUC-UCGCGCUCc -3'
miRNA:   3'- aaGGCCa-----UGC-CUGUCGGcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 151904 0.66 0.814492
Target:  5'- uUUCCGGUA-GG-CAuGCCGUCGuCGgUCc -3'
miRNA:   3'- -AAGGCCAUgCCuGU-CGGCAGC-GCgAG- -5'
8962 3' -59.6 NC_002512.2 + 137222 0.75 0.344601
Target:  5'- -cCCGGcGCGGGCGGCCGUcccggaucCGCGCg- -3'
miRNA:   3'- aaGGCCaUGCCUGUCGGCA--------GCGCGag -5'
8962 3' -59.6 NC_002512.2 + 136090 0.66 0.830805
Target:  5'- -gCCGGcUGCGGACGcCCGUCacccgaucCGCUCc -3'
miRNA:   3'- aaGGCC-AUGCCUGUcGGCAGc-------GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 135230 0.66 0.830805
Target:  5'- -cCCGGcccCGGGCcgccucgaGGCCGUCguccgcgccGCGCUCg -3'
miRNA:   3'- aaGGCCau-GCCUG--------UCGGCAG---------CGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 134768 0.77 0.276631
Target:  5'- gUCCGGUucgucgGCGGGCccGCCGUCGCcgaGCUCg -3'
miRNA:   3'- aAGGCCA------UGCCUGu-CGGCAGCG---CGAG- -5'
8962 3' -59.6 NC_002512.2 + 134573 0.72 0.494379
Target:  5'- gUUCCGGUACGG-CGGCC--CGCGgUCc -3'
miRNA:   3'- -AAGGCCAUGCCuGUCGGcaGCGCgAG- -5'
8962 3' -59.6 NC_002512.2 + 131747 0.68 0.753024
Target:  5'- -gCCGGgGCGGGCGGCCGcgacgaccaGCGCc- -3'
miRNA:   3'- aaGGCCaUGCCUGUCGGCag-------CGCGag -5'
8962 3' -59.6 NC_002512.2 + 128671 0.7 0.60874
Target:  5'- -gCCGGaacccgGCGGACggGGCCGUCGUGaUCg -3'
miRNA:   3'- aaGGCCa-----UGCCUG--UCGGCAGCGCgAG- -5'
8962 3' -59.6 NC_002512.2 + 128227 0.68 0.725063
Target:  5'- -aUCGGccCGGcguccGCGGCCGcCGCGCUCc -3'
miRNA:   3'- aaGGCCauGCC-----UGUCGGCaGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 127648 0.69 0.696442
Target:  5'- aUCgGGUcgcuCGGACGGCCGgUCGagggcCGCUCc -3'
miRNA:   3'- aAGgCCAu---GCCUGUCGGC-AGC-----GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 126399 0.66 0.85402
Target:  5'- -cCCGGggcccCGGGC-GCCGUCGaCGC-Cg -3'
miRNA:   3'- aaGGCCau---GCCUGuCGGCAGC-GCGaG- -5'
8962 3' -59.6 NC_002512.2 + 126344 0.72 0.503589
Target:  5'- gUCCGGgACGGGCGcGCaCGaCGCGUUCa -3'
miRNA:   3'- aAGGCCaUGCCUGU-CG-GCaGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 125972 0.68 0.741933
Target:  5'- -cCCGGUACuGGACgcagaagcgcuucagGGCCGUgaaggucucguugcaCGCGUUCg -3'
miRNA:   3'- aaGGCCAUG-CCUG---------------UCGGCA---------------GCGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.