miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 3' -59.6 NC_002512.2 + 221678 0.66 0.830805
Target:  5'- gUCUGGgacGCGGACAcCCGcccggCGaCGCUCg -3'
miRNA:   3'- aAGGCCa--UGCCUGUcGGCa----GC-GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 218780 0.71 0.566015
Target:  5'- gUCCGGggacgaggccgagGCGGACGacaccGCCGUC-CGCUCc -3'
miRNA:   3'- aAGGCCa------------UGCCUGU-----CGGCAGcGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 218303 0.75 0.374961
Target:  5'- -cCCGGcccUGGGCGGCCGcUCGUGCUCc -3'
miRNA:   3'- aaGGCCau-GCCUGUCGGC-AGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 217541 0.67 0.806105
Target:  5'- -cCUGGUugaacCGGGCGuuGuuGUCGCGUUCg -3'
miRNA:   3'- aaGGCCAu----GCCUGU--CggCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 215217 0.66 0.846457
Target:  5'- --gCGGgGCGGACAacGCCGUCuaccUGCUCg -3'
miRNA:   3'- aagGCCaUGCCUGU--CGGCAGc---GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 214223 0.66 0.838717
Target:  5'- -cCCGGgACGucaGGCGGCuCGUCG-GCUCg -3'
miRNA:   3'- aaGGCCaUGC---CUGUCG-GCAGCgCGAG- -5'
8962 3' -59.6 NC_002512.2 + 210829 0.69 0.677103
Target:  5'- cUCCGGUG-GGACacGGCCGUCuggggGCuGCUCc -3'
miRNA:   3'- aAGGCCAUgCCUG--UCGGCAG-----CG-CGAG- -5'
8962 3' -59.6 NC_002512.2 + 209746 1.06 0.003422
Target:  5'- cUUCCGGUACGGACAGCCGUCGCGCUCc -3'
miRNA:   3'- -AAGGCCAUGCCUGUCGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 207377 0.69 0.643949
Target:  5'- gUUCGGcguccccacgaugAUGGACGGCUGcugCGCGCUCa -3'
miRNA:   3'- aAGGCCa------------UGCCUGUCGGCa--GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 204727 0.69 0.686794
Target:  5'- -cCCGGgGCGGGgGGCCGgacccggGUGCUCa -3'
miRNA:   3'- aaGGCCaUGCCUgUCGGCag-----CGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 201699 0.67 0.788907
Target:  5'- gUCUGGUGCGGgaucggcgGCGGCguCGUCGuCGCg- -3'
miRNA:   3'- aAGGCCAUGCC--------UGUCG--GCAGC-GCGag -5'
8962 3' -59.6 NC_002512.2 + 201426 0.67 0.762161
Target:  5'- cUUCUGGUGuCGGcgGGUCGUCGCGauCUCg -3'
miRNA:   3'- -AAGGCCAU-GCCugUCGGCAGCGC--GAG- -5'
8962 3' -59.6 NC_002512.2 + 195719 0.68 0.743791
Target:  5'- uUUCCGacgGCGGGCAGaCGUCGaCGCa- -3'
miRNA:   3'- -AAGGCca-UGCCUGUCgGCAGC-GCGag -5'
8962 3' -59.6 NC_002512.2 + 192878 0.7 0.58925
Target:  5'- -cCCGG---GGACGcauauaagcGCCGUCGCGCUCc -3'
miRNA:   3'- aaGGCCaugCCUGU---------CGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 191473 0.66 0.830805
Target:  5'- -gCCGaGUAcgaggcgcCGGACAGCgCGgcgaccggCGCGCUCc -3'
miRNA:   3'- aaGGC-CAU--------GCCUGUCG-GCa-------GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 189045 0.69 0.676132
Target:  5'- gUUCGGUAauguccuCGGAgCGGCCGgcgGCGCUCu -3'
miRNA:   3'- aAGGCCAU-------GCCU-GUCGGCag-CGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 186012 0.72 0.512872
Target:  5'- gUCCGGcACcuGGAC-GCCugcGUCGCGCUCg -3'
miRNA:   3'- aAGGCCaUG--CCUGuCGG---CAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 184674 0.75 0.367204
Target:  5'- aUCCGGU-CGG-CGGCCGUcCGCGC-Cg -3'
miRNA:   3'- aAGGCCAuGCCuGUCGGCA-GCGCGaG- -5'
8962 3' -59.6 NC_002512.2 + 184385 0.68 0.734467
Target:  5'- gUCCugauGGUACcGACGaugcuGCCGUCGUGUUCg -3'
miRNA:   3'- aAGG----CCAUGcCUGU-----CGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 183893 0.69 0.677103
Target:  5'- uUUCCGGuUACGGACAGUCGaacggcUGC-CUCg -3'
miRNA:   3'- -AAGGCC-AUGCCUGUCGGCa-----GCGcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.