miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 3' -59.6 NC_002512.2 + 209746 1.06 0.003422
Target:  5'- cUUCCGGUACGGACAGCCGUCGCGCUCc -3'
miRNA:   3'- -AAGGCCAUGCCUGUCGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 120314 0.78 0.225002
Target:  5'- -gCCGGUagcACGGACAgGCCGUCGCGUc- -3'
miRNA:   3'- aaGGCCA---UGCCUGU-CGGCAGCGCGag -5'
8962 3' -59.6 NC_002512.2 + 134768 0.77 0.276631
Target:  5'- gUCCGGUucgucgGCGGGCccGCCGUCGCcgaGCUCg -3'
miRNA:   3'- aAGGCCA------UGCCUGu-CGGCAGCG---CGAG- -5'
8962 3' -59.6 NC_002512.2 + 137222 0.75 0.344601
Target:  5'- -cCCGGcGCGGGCGGCCGUcccggaucCGCGCg- -3'
miRNA:   3'- aaGGCCaUGCCUGUCGGCA--------GCGCGag -5'
8962 3' -59.6 NC_002512.2 + 184674 0.75 0.367204
Target:  5'- aUCCGGU-CGG-CGGCCGUcCGCGC-Cg -3'
miRNA:   3'- aAGGCCAuGCCuGUCGGCA-GCGCGaG- -5'
8962 3' -59.6 NC_002512.2 + 218303 0.75 0.374961
Target:  5'- -cCCGGcccUGGGCGGCCGcUCGUGCUCc -3'
miRNA:   3'- aaGGCCau-GCCUGUCGGC-AGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 34893 0.73 0.449564
Target:  5'- gUUCGGUcggaGCGGACAGCCauggacGUCcuauGCGCUCg -3'
miRNA:   3'- aAGGCCA----UGCCUGUCGG------CAG----CGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 134573 0.72 0.494379
Target:  5'- gUUCCGGUACGG-CGGCC--CGCGgUCc -3'
miRNA:   3'- -AAGGCCAUGCCuGUCGGcaGCGCgAG- -5'
8962 3' -59.6 NC_002512.2 + 126344 0.72 0.503589
Target:  5'- gUCCGGgACGGGCGcGCaCGaCGCGUUCa -3'
miRNA:   3'- aAGGCCaUGCCUGU-CG-GCaGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 108590 0.72 0.503589
Target:  5'- gUUCCGG-GCGGAgAGCgGUCGCaaGUUCg -3'
miRNA:   3'- -AAGGCCaUGCCUgUCGgCAGCG--CGAG- -5'
8962 3' -59.6 NC_002512.2 + 29677 0.72 0.512872
Target:  5'- cUCCGGcuccuCGGGC--UCGUCGCGCUCg -3'
miRNA:   3'- aAGGCCau---GCCUGucGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 186012 0.72 0.512872
Target:  5'- gUCCGGcACcuGGAC-GCCugcGUCGCGCUCg -3'
miRNA:   3'- aAGGCCaUG--CCUGuCGG---CAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 75565 0.71 0.541122
Target:  5'- -gCCGGgGCGGggccGCcGCCGUCGCGgUCg -3'
miRNA:   3'- aaGGCCaUGCC----UGuCGGCAGCGCgAG- -5'
8962 3' -59.6 NC_002512.2 + 169109 0.71 0.550656
Target:  5'- cUCgCGGggcguuCGGucCGGUCGUCGCGCUCc -3'
miRNA:   3'- aAG-GCCau----GCCu-GUCGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 218780 0.71 0.566015
Target:  5'- gUCCGGggacgaggccgagGCGGACGacaccGCCGUC-CGCUCc -3'
miRNA:   3'- aAGGCCa------------UGCCUGU-----CGGCAGcGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 192878 0.7 0.58925
Target:  5'- -cCCGG---GGACGcauauaagcGCCGUCGCGCUCc -3'
miRNA:   3'- aaGGCCaugCCUGU---------CGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 101595 0.7 0.58925
Target:  5'- -cCCGcggucGUGCGGGCGGCCGUCG-GCcCg -3'
miRNA:   3'- aaGGC-----CAUGCCUGUCGGCAGCgCGaG- -5'
8962 3' -59.6 NC_002512.2 + 118212 0.7 0.58925
Target:  5'- gUCUGGUGC-GACggGGCCcUCGUGCUCg -3'
miRNA:   3'- aAGGCCAUGcCUG--UCGGcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 128671 0.7 0.60874
Target:  5'- -gCCGGaacccgGCGGACggGGCCGUCGUGaUCg -3'
miRNA:   3'- aaGGCCa-----UGCCUG--UCGGCAGCGCgAG- -5'
8962 3' -59.6 NC_002512.2 + 160824 0.7 0.60874
Target:  5'- -cCCGGcaccagcagGCGGGCGGCCGgcgGCGCUg -3'
miRNA:   3'- aaGGCCa--------UGCCUGUCGGCag-CGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.