Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8962 | 3' | -59.6 | NC_002512.2 | + | 91880 | 0.7 | 0.618513 |
Target: 5'- gUCCGGcGCGGGCGGCgG-CGCggcgcacggcccGCUCg -3' miRNA: 3'- aAGGCCaUGCCUGUCGgCaGCG------------CGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 92717 | 0.7 | 0.618513 |
Target: 5'- -gCC-GUACGGACGuCCGgggggCGCGCUCg -3' miRNA: 3'- aaGGcCAUGCCUGUcGGCa----GCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 108835 | 0.7 | 0.618513 |
Target: 5'- -cUCGGgcgGCGGGuaccCGGCCcagagGUCGCGCUCg -3' miRNA: 3'- aaGGCCa--UGCCU----GUCGG-----CAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 114475 | 0.7 | 0.628295 |
Target: 5'- --gUGGUGCuGGAUGGCCGUCaccGCGUUCu -3' miRNA: 3'- aagGCCAUG-CCUGUCGGCAG---CGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 207377 | 0.69 | 0.643949 |
Target: 5'- gUUCGGcguccccacgaugAUGGACGGCUGcugCGCGCUCa -3' miRNA: 3'- aAGGCCa------------UGCCUGUCGGCa--GCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 23138 | 0.69 | 0.64786 |
Target: 5'- gUUCCGc-GCGGGCGGCa-UCGCGUUCg -3' miRNA: 3'- -AAGGCcaUGCCUGUCGgcAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 19366 | 0.69 | 0.657628 |
Target: 5'- gUCgGGggcuCGG-CGGCC-UCGCGCUCg -3' miRNA: 3'- aAGgCCau--GCCuGUCGGcAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 111924 | 0.69 | 0.657628 |
Target: 5'- gUUCgGGUGcCGGaACAGCUccagGUCGgCGCUCa -3' miRNA: 3'- -AAGgCCAU-GCC-UGUCGG----CAGC-GCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 189045 | 0.69 | 0.676132 |
Target: 5'- gUUCGGUAauguccuCGGAgCGGCCGgcgGCGCUCu -3' miRNA: 3'- aAGGCCAU-------GCCU-GUCGGCag-CGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 183893 | 0.69 | 0.677103 |
Target: 5'- uUUCCGGuUACGGACAGUCGaacggcUGC-CUCg -3' miRNA: 3'- -AAGGCC-AUGCCUGUCGGCa-----GCGcGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 210829 | 0.69 | 0.677103 |
Target: 5'- cUCCGGUG-GGACacGGCCGUCuggggGCuGCUCc -3' miRNA: 3'- aAGGCCAUgCCUG--UCGGCAG-----CG-CGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 170115 | 0.69 | 0.686794 |
Target: 5'- -gCCGGUugGGAUAgGCCGUaggggucgUGUGCUg -3' miRNA: 3'- aaGGCCAugCCUGU-CGGCA--------GCGCGAg -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 83969 | 0.69 | 0.686794 |
Target: 5'- -cCCGGcgGCGGAUgcccggcgcggGGCgGUCGCGCa- -3' miRNA: 3'- aaGGCCa-UGCCUG-----------UCGgCAGCGCGag -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 204727 | 0.69 | 0.686794 |
Target: 5'- -cCCGGgGCGGGgGGCCGgacccggGUGCUCa -3' miRNA: 3'- aaGGCCaUGCCUgUCGGCag-----CGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 119021 | 0.69 | 0.696442 |
Target: 5'- cUCCuGGUggACGGGcCGGCCGUCGUGggCc -3' miRNA: 3'- aAGG-CCA--UGCCU-GUCGGCAGCGCgaG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 127648 | 0.69 | 0.696442 |
Target: 5'- aUCgGGUcgcuCGGACGGCCGgUCGagggcCGCUCc -3' miRNA: 3'- aAGgCCAu---GCCUGUCGGC-AGC-----GCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 104773 | 0.69 | 0.696442 |
Target: 5'- -cCCGGU-CGGACGGCgCGUggcggggucCGCGCg- -3' miRNA: 3'- aaGGCCAuGCCUGUCG-GCA---------GCGCGag -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 119101 | 0.69 | 0.696442 |
Target: 5'- ---aGGUGCGGGCGGCC-UCgGCGCa- -3' miRNA: 3'- aaggCCAUGCCUGUCGGcAG-CGCGag -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 3679 | 0.69 | 0.696442 |
Target: 5'- -cCCGGUGauGGCccGGCCG-CGCGCUa -3' miRNA: 3'- aaGGCCAUgcCUG--UCGGCaGCGCGAg -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 107007 | 0.68 | 0.706042 |
Target: 5'- -gCCGGggucgGCcGAgAGCCGggCGCGCUCc -3' miRNA: 3'- aaGGCCa----UGcCUgUCGGCa-GCGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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