miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 3' -59.6 NC_002512.2 + 77781 0.66 0.841834
Target:  5'- cUCCGGgucggGCGGACGGUuccuucgagugCGUguccgauagcgaguaCGUGCUCg -3'
miRNA:   3'- aAGGCCa----UGCCUGUCG-----------GCA---------------GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 126399 0.66 0.85402
Target:  5'- -cCCGGggcccCGGGC-GCCGUCGaCGC-Cg -3'
miRNA:   3'- aaGGCCau---GCCUGuCGGCAGC-GCGaG- -5'
8962 3' -59.6 NC_002512.2 + 215217 0.66 0.846457
Target:  5'- --gCGGgGCGGACAacGCCGUCuaccUGCUCg -3'
miRNA:   3'- aagGCCaUGCCUGU--CGGCAGc---GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 103347 0.66 0.846457
Target:  5'- -cCCGGgGCGGACGGCacgGUCGaGgUCa -3'
miRNA:   3'- aaGGCCaUGCCUGUCGg--CAGCgCgAG- -5'
8962 3' -59.6 NC_002512.2 + 26456 0.66 0.822728
Target:  5'- uUUCUGccaauUACGGACAgcgucaccucuGCCGuUCGUGCUCg -3'
miRNA:   3'- -AAGGCc----AUGCCUGU-----------CGGC-AGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 124959 0.66 0.830805
Target:  5'- -gCCGG-ACGaGGaGGCCGUCGCGgaCu -3'
miRNA:   3'- aaGGCCaUGC-CUgUCGGCAGCGCgaG- -5'
8962 3' -59.6 NC_002512.2 + 156147 0.66 0.846457
Target:  5'- --aCGGcUACGGuagccagaAGCUGUCGCuGCUCg -3'
miRNA:   3'- aagGCC-AUGCCug------UCGGCAGCG-CGAG- -5'
8962 3' -59.6 NC_002512.2 + 106213 0.67 0.762161
Target:  5'- aUCCGGUccGCGGccaugGCGGCgCG-CGCGCg- -3'
miRNA:   3'- aAGGCCA--UGCC-----UGUCG-GCaGCGCGag -5'
8962 3' -59.6 NC_002512.2 + 124640 0.67 0.765787
Target:  5'- aUCCGGgugcGCGGcGCGgcgcucacgcuguacGCCuUCGCGCUCa -3'
miRNA:   3'- aAGGCCa---UGCC-UGU---------------CGGcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 82520 0.67 0.78011
Target:  5'- uUUCCGGUAUuccCGGUCGgcCGCGCUCu -3'
miRNA:   3'- -AAGGCCAUGccuGUCGGCa-GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 67943 0.67 0.78011
Target:  5'- cUCCGG-ACGGAgAGggGUCGCGC-Cg -3'
miRNA:   3'- aAGGCCaUGCCUgUCggCAGCGCGaG- -5'
8962 3' -59.6 NC_002512.2 + 70881 0.67 0.78011
Target:  5'- -cCCGGcGCGGACgccggGGCCGcCGC-CUCc -3'
miRNA:   3'- aaGGCCaUGCCUG-----UCGGCaGCGcGAG- -5'
8962 3' -59.6 NC_002512.2 + 90935 0.67 0.806105
Target:  5'- -gCCGGcGCGGccGCcGCCGUCGUgguggugguGCUCg -3'
miRNA:   3'- aaGGCCaUGCC--UGuCGGCAGCG---------CGAG- -5'
8962 3' -59.6 NC_002512.2 + 217541 0.67 0.806105
Target:  5'- -cCUGGUugaacCGGGCGuuGuuGUCGCGUUCg -3'
miRNA:   3'- aaGGCCAu----GCCUGU--CggCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 201426 0.67 0.762161
Target:  5'- cUUCUGGUGuCGGcgGGUCGUCGCGauCUCg -3'
miRNA:   3'- -AAGGCCAU-GCCugUCGGCAGCGC--GAG- -5'
8962 3' -59.6 NC_002512.2 + 201699 0.67 0.788907
Target:  5'- gUCUGGUGCGGgaucggcgGCGGCguCGUCGuCGCg- -3'
miRNA:   3'- aAGGCCAUGCC--------UGUCG--GCAGC-GCGag -5'
8962 3' -59.6 NC_002512.2 + 195719 0.68 0.743791
Target:  5'- uUUCCGacgGCGGGCAGaCGUCGaCGCa- -3'
miRNA:   3'- -AAGGCca-UGCCUGUCgGCAGC-GCGag -5'
8962 3' -59.6 NC_002512.2 + 125972 0.68 0.741933
Target:  5'- -cCCGGUACuGGACgcagaagcgcuucagGGCCGUgaaggucucguugcaCGCGUUCg -3'
miRNA:   3'- aaGGCCAUG-CCUG---------------UCGGCA---------------GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 131747 0.68 0.753024
Target:  5'- -gCCGGgGCGGGCGGCCGcgacgaccaGCGCc- -3'
miRNA:   3'- aaGGCCaUGCCUGUCGGCag-------CGCGag -5'
8962 3' -59.6 NC_002512.2 + 71307 0.68 0.753024
Target:  5'- gUCCGagucGUACGuGAC-GCUGUCGCGC-Ca -3'
miRNA:   3'- aAGGC----CAUGC-CUGuCGGCAGCGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.