miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 3' -59.6 NC_002512.2 + 95242 0.66 0.838717
Target:  5'- cUCCGGagggggcgucCGGAgGGCCG-CGCgGCUCc -3'
miRNA:   3'- aAGGCCau--------GCCUgUCGGCaGCG-CGAG- -5'
8962 3' -59.6 NC_002512.2 + 109951 0.66 0.830805
Target:  5'- -aCCGcGUGCGGG-GGCgaCGcCGCGCUCg -3'
miRNA:   3'- aaGGC-CAUGCCUgUCG--GCaGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 135230 0.66 0.830805
Target:  5'- -cCCGGcccCGGGCcgccucgaGGCCGUCguccgcgccGCGCUCg -3'
miRNA:   3'- aaGGCCau-GCCUG--------UCGGCAG---------CGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 82924 0.66 0.838717
Target:  5'- gUCuCGGccGCGGccGCcGUCGUCGCGCUUc -3'
miRNA:   3'- aAG-GCCa-UGCC--UGuCGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 2103 0.66 0.814492
Target:  5'- --gCGGUACGGccGCGGCUcgGUCGCGggCg -3'
miRNA:   3'- aagGCCAUGCC--UGUCGG--CAGCGCgaG- -5'
8962 3' -59.6 NC_002512.2 + 151904 0.66 0.814492
Target:  5'- uUUCCGGUA-GG-CAuGCCGUCGuCGgUCc -3'
miRNA:   3'- -AAGGCCAUgCCuGU-CGGCAGC-GCgAG- -5'
8962 3' -59.6 NC_002512.2 + 136090 0.66 0.830805
Target:  5'- -gCCGGcUGCGGACGcCCGUCacccgaucCGCUCc -3'
miRNA:   3'- aaGGCC-AUGCCUGUcGGCAGc-------GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 18532 0.66 0.846457
Target:  5'- -gCCGG-GCGGucaGGCCG-CGCGCg- -3'
miRNA:   3'- aaGGCCaUGCCug-UCGGCaGCGCGag -5'
8962 3' -59.6 NC_002512.2 + 98568 0.66 0.846457
Target:  5'- aUCCGGcgggcgccuCGGGCGGCggguCGUCcGCGCUg -3'
miRNA:   3'- aAGGCCau-------GCCUGUCG----GCAG-CGCGAg -5'
8962 3' -59.6 NC_002512.2 + 45206 0.66 0.830805
Target:  5'- -aCCGGcggcGCGGACGGCCGccgaccggauuUCgGCGCg- -3'
miRNA:   3'- aaGGCCa---UGCCUGUCGGC-----------AG-CGCGag -5'
8962 3' -59.6 NC_002512.2 + 18565 0.66 0.85402
Target:  5'- -cCCGGgccCGGACcGCCacgaUGCGCUCg -3'
miRNA:   3'- aaGGCCau-GCCUGuCGGca--GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 126399 0.66 0.85402
Target:  5'- -cCCGGggcccCGGGC-GCCGUCGaCGC-Cg -3'
miRNA:   3'- aaGGCCau---GCCUGuCGGCAGC-GCGaG- -5'
8962 3' -59.6 NC_002512.2 + 68367 0.66 0.85402
Target:  5'- -cCCGGgcucgGCGGu--GCCGUcCGCGCa- -3'
miRNA:   3'- aaGGCCa----UGCCuguCGGCA-GCGCGag -5'
8962 3' -59.6 NC_002512.2 + 22400 0.66 0.846457
Target:  5'- aUCCGGagACGGGC-GCCGagacgaGCGaCUCg -3'
miRNA:   3'- aAGGCCa-UGCCUGuCGGCag----CGC-GAG- -5'
8962 3' -59.6 NC_002512.2 + 8715 0.66 0.838717
Target:  5'- cUCCgaGGU-CGGuCGGCCG-CGCGCg- -3'
miRNA:   3'- aAGG--CCAuGCCuGUCGGCaGCGCGag -5'
8962 3' -59.6 NC_002512.2 + 171833 0.66 0.85402
Target:  5'- aUCCGGUACcgcgGGACGGuCCGgcCGCGg-- -3'
miRNA:   3'- aAGGCCAUG----CCUGUC-GGCa-GCGCgag -5'
8962 3' -59.6 NC_002512.2 + 215217 0.66 0.846457
Target:  5'- --gCGGgGCGGACAacGCCGUCuaccUGCUCg -3'
miRNA:   3'- aagGCCaUGCCUGU--CGGCAGc---GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 103347 0.66 0.846457
Target:  5'- -cCCGGgGCGGACGGCacgGUCGaGgUCa -3'
miRNA:   3'- aaGGCCaUGCCUGUCGg--CAGCgCgAG- -5'
8962 3' -59.6 NC_002512.2 + 77781 0.66 0.841834
Target:  5'- cUCCGGgucggGCGGACGGUuccuucgagugCGUguccgauagcgaguaCGUGCUCg -3'
miRNA:   3'- aAGGCCa----UGCCUGUCG-----------GCA---------------GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 156147 0.66 0.846457
Target:  5'- --aCGGcUACGGuagccagaAGCUGUCGCuGCUCg -3'
miRNA:   3'- aagGCC-AUGCCug------UCGGCAGCG-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.