miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 3' -59.6 NC_002512.2 + 2103 0.66 0.814492
Target:  5'- --gCGGUACGGccGCGGCUcgGUCGCGggCg -3'
miRNA:   3'- aagGCCAUGCC--UGUCGG--CAGCGCgaG- -5'
8962 3' -59.6 NC_002512.2 + 3679 0.69 0.696442
Target:  5'- -cCCGGUGauGGCccGGCCG-CGCGCUa -3'
miRNA:   3'- aaGGCCAUgcCUG--UCGGCaGCGCGAg -5'
8962 3' -59.6 NC_002512.2 + 8715 0.66 0.838717
Target:  5'- cUCCgaGGU-CGGuCGGCCG-CGCGCg- -3'
miRNA:   3'- aAGG--CCAuGCCuGUCGGCaGCGCGag -5'
8962 3' -59.6 NC_002512.2 + 18532 0.66 0.846457
Target:  5'- -gCCGG-GCGGucaGGCCG-CGCGCg- -3'
miRNA:   3'- aaGGCCaUGCCug-UCGGCaGCGCGag -5'
8962 3' -59.6 NC_002512.2 + 18565 0.66 0.85402
Target:  5'- -cCCGGgccCGGACcGCCacgaUGCGCUCg -3'
miRNA:   3'- aaGGCCau-GCCUGuCGGca--GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 19366 0.69 0.657628
Target:  5'- gUCgGGggcuCGG-CGGCC-UCGCGCUCg -3'
miRNA:   3'- aAGgCCau--GCCuGUCGGcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 22400 0.66 0.846457
Target:  5'- aUCCGGagACGGGC-GCCGagacgaGCGaCUCg -3'
miRNA:   3'- aAGGCCa-UGCCUGuCGGCag----CGC-GAG- -5'
8962 3' -59.6 NC_002512.2 + 23138 0.69 0.64786
Target:  5'- gUUCCGc-GCGGGCGGCa-UCGCGUUCg -3'
miRNA:   3'- -AAGGCcaUGCCUGUCGgcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 26456 0.66 0.822728
Target:  5'- uUUCUGccaauUACGGACAgcgucaccucuGCCGuUCGUGCUCg -3'
miRNA:   3'- -AAGGCc----AUGCCUGU-----------CGGC-AGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 29677 0.72 0.512872
Target:  5'- cUCCGGcuccuCGGGC--UCGUCGCGCUCg -3'
miRNA:   3'- aAGGCCau---GCCUGucGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 34893 0.73 0.449564
Target:  5'- gUUCGGUcggaGCGGACAGCCauggacGUCcuauGCGCUCg -3'
miRNA:   3'- aAGGCCA----UGCCUGUCGG------CAG----CGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 36446 0.68 0.734467
Target:  5'- -cCCGccACcGGCGGCCGcggUCGCGCUCg -3'
miRNA:   3'- aaGGCcaUGcCUGUCGGC---AGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 45206 0.66 0.830805
Target:  5'- -aCCGGcggcGCGGACGGCCGccgaccggauuUCgGCGCg- -3'
miRNA:   3'- aaGGCCa---UGCCUGUCGGC-----------AG-CGCGag -5'
8962 3' -59.6 NC_002512.2 + 67943 0.67 0.78011
Target:  5'- cUCCGG-ACGGAgAGggGUCGCGC-Cg -3'
miRNA:   3'- aAGGCCaUGCCUgUCggCAGCGCGaG- -5'
8962 3' -59.6 NC_002512.2 + 68367 0.66 0.85402
Target:  5'- -cCCGGgcucgGCGGu--GCCGUcCGCGCa- -3'
miRNA:   3'- aaGGCCa----UGCCuguCGGCA-GCGCGag -5'
8962 3' -59.6 NC_002512.2 + 70881 0.67 0.78011
Target:  5'- -cCCGGcGCGGACgccggGGCCGcCGC-CUCc -3'
miRNA:   3'- aaGGCCaUGCCUG-----UCGGCaGCGcGAG- -5'
8962 3' -59.6 NC_002512.2 + 71307 0.68 0.753024
Target:  5'- gUCCGagucGUACGuGAC-GCUGUCGCGC-Ca -3'
miRNA:   3'- aAGGC----CAUGC-CUGuCGGCAGCGCGaG- -5'
8962 3' -59.6 NC_002512.2 + 75565 0.71 0.541122
Target:  5'- -gCCGGgGCGGggccGCcGCCGUCGCGgUCg -3'
miRNA:   3'- aaGGCCaUGCC----UGuCGGCAGCGCgAG- -5'
8962 3' -59.6 NC_002512.2 + 77781 0.66 0.841834
Target:  5'- cUCCGGgucggGCGGACGGUuccuucgagugCGUguccgauagcgaguaCGUGCUCg -3'
miRNA:   3'- aAGGCCa----UGCCUGUCG-----------GCA---------------GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 81368 0.68 0.715585
Target:  5'- -gCCGGgGCGGGCGGCgGcCGC-CUCc -3'
miRNA:   3'- aaGGCCaUGCCUGUCGgCaGCGcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.