miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 3' -59.6 NC_002512.2 + 36446 0.68 0.734467
Target:  5'- -cCCGccACcGGCGGCCGcggUCGCGCUCg -3'
miRNA:   3'- aaGGCcaUGcCUGUCGGC---AGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 19366 0.69 0.657628
Target:  5'- gUCgGGggcuCGG-CGGCC-UCGCGCUCg -3'
miRNA:   3'- aAGgCCau--GCCuGUCGGcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 111924 0.69 0.657628
Target:  5'- gUUCgGGUGcCGGaACAGCUccagGUCGgCGCUCa -3'
miRNA:   3'- -AAGgCCAU-GCC-UGUCGG----CAGC-GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 170115 0.69 0.686794
Target:  5'- -gCCGGUugGGAUAgGCCGUaggggucgUGUGCUg -3'
miRNA:   3'- aaGGCCAugCCUGU-CGGCA--------GCGCGAg -5'
8962 3' -59.6 NC_002512.2 + 83969 0.69 0.686794
Target:  5'- -cCCGGcgGCGGAUgcccggcgcggGGCgGUCGCGCa- -3'
miRNA:   3'- aaGGCCa-UGCCUG-----------UCGgCAGCGCGag -5'
8962 3' -59.6 NC_002512.2 + 119021 0.69 0.696442
Target:  5'- cUCCuGGUggACGGGcCGGCCGUCGUGggCc -3'
miRNA:   3'- aAGG-CCA--UGCCU-GUCGGCAGCGCgaG- -5'
8962 3' -59.6 NC_002512.2 + 104773 0.69 0.696442
Target:  5'- -cCCGGU-CGGACGGCgCGUggcggggucCGCGCg- -3'
miRNA:   3'- aaGGCCAuGCCUGUCG-GCA---------GCGCGag -5'
8962 3' -59.6 NC_002512.2 + 81368 0.68 0.715585
Target:  5'- -gCCGGgGCGGGCGGCgGcCGC-CUCc -3'
miRNA:   3'- aaGGCCaUGCCUGUCGgCaGCGcGAG- -5'
8962 3' -59.6 NC_002512.2 + 84540 0.68 0.715585
Target:  5'- -gCCGGcguCGGGCGGCgcggCGagGCGCUCg -3'
miRNA:   3'- aaGGCCau-GCCUGUCG----GCagCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 23138 0.69 0.64786
Target:  5'- gUUCCGc-GCGGGCGGCa-UCGCGUUCg -3'
miRNA:   3'- -AAGGCcaUGCCUGUCGgcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 114475 0.7 0.628295
Target:  5'- --gUGGUGCuGGAUGGCCGUCaccGCGUUCu -3'
miRNA:   3'- aagGCCAUG-CCUGUCGGCAG---CGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 108835 0.7 0.618513
Target:  5'- -cUCGGgcgGCGGGuaccCGGCCcagagGUCGCGCUCg -3'
miRNA:   3'- aaGGCCa--UGCCU----GUCGG-----CAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 134768 0.77 0.276631
Target:  5'- gUCCGGUucgucgGCGGGCccGCCGUCGCcgaGCUCg -3'
miRNA:   3'- aAGGCCA------UGCCUGu-CGGCAGCG---CGAG- -5'
8962 3' -59.6 NC_002512.2 + 137222 0.75 0.344601
Target:  5'- -cCCGGcGCGGGCGGCCGUcccggaucCGCGCg- -3'
miRNA:   3'- aaGGCCaUGCCUGUCGGCA--------GCGCGag -5'
8962 3' -59.6 NC_002512.2 + 134573 0.72 0.494379
Target:  5'- gUUCCGGUACGG-CGGCC--CGCGgUCc -3'
miRNA:   3'- -AAGGCCAUGCCuGUCGGcaGCGCgAG- -5'
8962 3' -59.6 NC_002512.2 + 29677 0.72 0.512872
Target:  5'- cUCCGGcuccuCGGGC--UCGUCGCGCUCg -3'
miRNA:   3'- aAGGCCau---GCCUGucGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 75565 0.71 0.541122
Target:  5'- -gCCGGgGCGGggccGCcGCCGUCGCGgUCg -3'
miRNA:   3'- aaGGCCaUGCC----UGuCGGCAGCGCgAG- -5'
8962 3' -59.6 NC_002512.2 + 101595 0.7 0.58925
Target:  5'- -cCCGcggucGUGCGGGCGGCCGUCG-GCcCg -3'
miRNA:   3'- aaGGC-----CAUGCCUGUCGGCAGCgCGaG- -5'
8962 3' -59.6 NC_002512.2 + 118212 0.7 0.58925
Target:  5'- gUCUGGUGC-GACggGGCCcUCGUGCUCg -3'
miRNA:   3'- aAGGCCAUGcCUG--UCGGcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 128671 0.7 0.60874
Target:  5'- -gCCGGaacccgGCGGACggGGCCGUCGUGaUCg -3'
miRNA:   3'- aaGGCCa-----UGCCUG--UCGGCAGCGCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.