miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 3' -59.6 NC_002512.2 + 171833 0.66 0.85402
Target:  5'- aUCCGGUACcgcgGGACGGuCCGgcCGCGg-- -3'
miRNA:   3'- aAGGCCAUG----CCUGUC-GGCa-GCGCgag -5'
8962 3' -59.6 NC_002512.2 + 128227 0.68 0.725063
Target:  5'- -aUCGGccCGGcguccGCGGCCGcCGCGCUCc -3'
miRNA:   3'- aaGGCCauGCC-----UGUCGGCaGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 3679 0.69 0.696442
Target:  5'- -cCCGGUGauGGCccGGCCG-CGCGCUa -3'
miRNA:   3'- aaGGCCAUgcCUG--UCGGCaGCGCGAg -5'
8962 3' -59.6 NC_002512.2 + 209746 1.06 0.003422
Target:  5'- cUUCCGGUACGGACAGCCGUCGCGCUCc -3'
miRNA:   3'- -AAGGCCAUGCCUGUCGGCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 156147 0.66 0.846457
Target:  5'- --aCGGcUACGGuagccagaAGCUGUCGCuGCUCg -3'
miRNA:   3'- aagGCC-AUGCCug------UCGGCAGCG-CGAG- -5'
8962 3' -59.6 NC_002512.2 + 77781 0.66 0.841834
Target:  5'- cUCCGGgucggGCGGACGGUuccuucgagugCGUguccgauagcgaguaCGUGCUCg -3'
miRNA:   3'- aAGGCCa----UGCCUGUCG-----------GCA---------------GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 88708 0.66 0.838717
Target:  5'- aUCCGGUaGCGGGCcaGGaagaCGUCGCGg-- -3'
miRNA:   3'- aAGGCCA-UGCCUG--UCg---GCAGCGCgag -5'
8962 3' -59.6 NC_002512.2 + 221678 0.66 0.830805
Target:  5'- gUCUGGgacGCGGACAcCCGcccggCGaCGCUCg -3'
miRNA:   3'- aAGGCCa--UGCCUGUcGGCa----GC-GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 26456 0.66 0.822728
Target:  5'- uUUCUGccaauUACGGACAgcgucaccucuGCCGuUCGUGCUCg -3'
miRNA:   3'- -AAGGCc----AUGCCUGU-----------CGGC-AGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 155257 0.68 0.753024
Target:  5'- -cCCGGgccgucGCGcGGCGGUC-UCGCGCUCc -3'
miRNA:   3'- aaGGCCa-----UGC-CUGUCGGcAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 217541 0.67 0.806105
Target:  5'- -cCUGGUugaacCGGGCGuuGuuGUCGCGUUCg -3'
miRNA:   3'- aaGGCCAu----GCCUGU--CggCAGCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 191473 0.66 0.830805
Target:  5'- -gCCGaGUAcgaggcgcCGGACAGCgCGgcgaccggCGCGCUCc -3'
miRNA:   3'- aaGGC-CAU--------GCCUGUCG-GCa-------GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 126399 0.66 0.85402
Target:  5'- -cCCGGggcccCGGGC-GCCGUCGaCGC-Cg -3'
miRNA:   3'- aaGGCCau---GCCUGuCGGCAGC-GCGaG- -5'
8962 3' -59.6 NC_002512.2 + 201699 0.67 0.788907
Target:  5'- gUCUGGUGCGGgaucggcgGCGGCguCGUCGuCGCg- -3'
miRNA:   3'- aAGGCCAUGCC--------UGUCG--GCAGC-GCGag -5'
8962 3' -59.6 NC_002512.2 + 215217 0.66 0.846457
Target:  5'- --gCGGgGCGGACAacGCCGUCuaccUGCUCg -3'
miRNA:   3'- aagGCCaUGCCUGU--CGGCAGc---GCGAG- -5'
8962 3' -59.6 NC_002512.2 + 124959 0.66 0.830805
Target:  5'- -gCCGG-ACGaGGaGGCCGUCGCGgaCu -3'
miRNA:   3'- aaGGCCaUGC-CUgUCGGCAGCGCgaG- -5'
8962 3' -59.6 NC_002512.2 + 201426 0.67 0.762161
Target:  5'- cUUCUGGUGuCGGcgGGUCGUCGCGauCUCg -3'
miRNA:   3'- -AAGGCCAU-GCCugUCGGCAGCGC--GAG- -5'
8962 3' -59.6 NC_002512.2 + 107007 0.68 0.706042
Target:  5'- -gCCGGggucgGCcGAgAGCCGggCGCGCUCc -3'
miRNA:   3'- aaGGCCa----UGcCUgUCGGCa-GCGCGAG- -5'
8962 3' -59.6 NC_002512.2 + 103347 0.66 0.846457
Target:  5'- -cCCGGgGCGGACGGCacgGUCGaGgUCa -3'
miRNA:   3'- aaGGCCaUGCCUGUCGg--CAGCgCgAG- -5'
8962 3' -59.6 NC_002512.2 + 214223 0.66 0.838717
Target:  5'- -cCCGGgACGucaGGCGGCuCGUCG-GCUCg -3'
miRNA:   3'- aaGGCCaUGC---CUGUCG-GCAGCgCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.