Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8962 | 3' | -59.6 | NC_002512.2 | + | 209746 | 1.06 | 0.003422 |
Target: 5'- cUUCCGGUACGGACAGCCGUCGCGCUCc -3' miRNA: 3'- -AAGGCCAUGCCUGUCGGCAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 160824 | 0.7 | 0.60874 |
Target: 5'- -cCCGGcaccagcagGCGGGCGGCCGgcgGCGCUg -3' miRNA: 3'- aaGGCCa--------UGCCUGUCGGCag-CGCGAg -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 127648 | 0.69 | 0.696442 |
Target: 5'- aUCgGGUcgcuCGGACGGCCGgUCGagggcCGCUCc -3' miRNA: 3'- aAGgCCAu---GCCUGUCGGC-AGC-----GCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 174360 | 0.66 | 0.814492 |
Target: 5'- -gCCGGgaUGCGGAUGGCCGagaaCGgGUUCu -3' miRNA: 3'- aaGGCC--AUGCCUGUCGGCa---GCgCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 34893 | 0.73 | 0.449564 |
Target: 5'- gUUCGGUcggaGCGGACAGCCauggacGUCcuauGCGCUCg -3' miRNA: 3'- aAGGCCA----UGCCUGUCGG------CAG----CGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 169109 | 0.71 | 0.550656 |
Target: 5'- cUCgCGGggcguuCGGucCGGUCGUCGCGCUCc -3' miRNA: 3'- aAG-GCCau----GCCu-GUCGGCAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 221678 | 0.66 | 0.830805 |
Target: 5'- gUCUGGgacGCGGACAcCCGcccggCGaCGCUCg -3' miRNA: 3'- aAGGCCa--UGCCUGUcGGCa----GC-GCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 183893 | 0.69 | 0.677103 |
Target: 5'- uUUCCGGuUACGGACAGUCGaacggcUGC-CUCg -3' miRNA: 3'- -AAGGCC-AUGCCUGUCGGCa-----GCGcGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 204727 | 0.69 | 0.686794 |
Target: 5'- -cCCGGgGCGGGgGGCCGgacccggGUGCUCa -3' miRNA: 3'- aaGGCCaUGCCUgUCGGCag-----CGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 214223 | 0.66 | 0.838717 |
Target: 5'- -cCCGGgACGucaGGCGGCuCGUCG-GCUCg -3' miRNA: 3'- aaGGCCaUGC---CUGUCG-GCAGCgCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 192878 | 0.7 | 0.58925 |
Target: 5'- -cCCGG---GGACGcauauaagcGCCGUCGCGCUCc -3' miRNA: 3'- aaGGCCaugCCUGU---------CGGCAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 77781 | 0.66 | 0.841834 |
Target: 5'- cUCCGGgucggGCGGACGGUuccuucgagugCGUguccgauagcgaguaCGUGCUCg -3' miRNA: 3'- aAGGCCa----UGCCUGUCG-----------GCA---------------GCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 218303 | 0.75 | 0.374961 |
Target: 5'- -cCCGGcccUGGGCGGCCGcUCGUGCUCc -3' miRNA: 3'- aaGGCCau-GCCUGUCGGC-AGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 92717 | 0.7 | 0.618513 |
Target: 5'- -gCC-GUACGGACGuCCGgggggCGCGCUCg -3' miRNA: 3'- aaGGcCAUGCCUGUcGGCa----GCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 201426 | 0.67 | 0.762161 |
Target: 5'- cUUCUGGUGuCGGcgGGUCGUCGCGauCUCg -3' miRNA: 3'- -AAGGCCAU-GCCugUCGGCAGCGC--GAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 217541 | 0.67 | 0.806105 |
Target: 5'- -cCUGGUugaacCGGGCGuuGuuGUCGCGUUCg -3' miRNA: 3'- aaGGCCAu----GCCUGU--CggCAGCGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 156147 | 0.66 | 0.846457 |
Target: 5'- --aCGGcUACGGuagccagaAGCUGUCGCuGCUCg -3' miRNA: 3'- aagGCC-AUGCCug------UCGGCAGCG-CGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 119101 | 0.69 | 0.696442 |
Target: 5'- ---aGGUGCGGGCGGCC-UCgGCGCa- -3' miRNA: 3'- aaggCCAUGCCUGUCGGcAG-CGCGag -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 189045 | 0.69 | 0.676132 |
Target: 5'- gUUCGGUAauguccuCGGAgCGGCCGgcgGCGCUCu -3' miRNA: 3'- aAGGCCAU-------GCCU-GUCGGCag-CGCGAG- -5' |
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8962 | 3' | -59.6 | NC_002512.2 | + | 210829 | 0.69 | 0.677103 |
Target: 5'- cUCCGGUG-GGACacGGCCGUCuggggGCuGCUCc -3' miRNA: 3'- aAGGCCAUgCCUG--UCGGCAG-----CG-CGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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