miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 5' -56.9 NC_002512.2 + 158972 0.67 0.902264
Target:  5'- cGAGcgGUucgGCGGCCa-CGGCgGGGCGGa -3'
miRNA:   3'- -CUCuaCA---UGCUGGacGCCGgCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 96726 0.67 0.902264
Target:  5'- -cGcgGgcCGGCCcGCGGgaaCCGGACGAg -3'
miRNA:   3'- cuCuaCauGCUGGaCGCC---GGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 98263 0.67 0.902264
Target:  5'- cGAGA---GCGuCUUcGUGGCCGGGCGGg -3'
miRNA:   3'- -CUCUacaUGCuGGA-CGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 156498 0.67 0.896064
Target:  5'- uGGGcgGacacgGCGGCCUggGCGGCgGGGCGc -3'
miRNA:   3'- -CUCuaCa----UGCUGGA--CGCCGgCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 171844 0.67 0.896064
Target:  5'- cGGGAcgGUcCGGCC-GCGGCCGGgaggggGCGGa -3'
miRNA:   3'- -CUCUa-CAuGCUGGaCGCCGGCC------UGCU- -5'
8963 5' -56.9 NC_002512.2 + 159924 0.67 0.895433
Target:  5'- gGGGGccuUGUGCGAuacguccCCgGUGGCCGGACc- -3'
miRNA:   3'- -CUCU---ACAUGCU-------GGaCGCCGGCCUGcu -5'
8963 5' -56.9 NC_002512.2 + 175881 0.68 0.889651
Target:  5'- cGGGAUGUuguccACGuagcucACCaGCGGCUGcGACGAg -3'
miRNA:   3'- -CUCUACA-----UGC------UGGaCGCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 137039 0.68 0.889651
Target:  5'- aGGGGUGgcCGACCgggGaCGGCCagGGAgGAg -3'
miRNA:   3'- -CUCUACauGCUGGa--C-GCCGG--CCUgCU- -5'
8963 5' -56.9 NC_002512.2 + 59432 0.68 0.885702
Target:  5'- ---cUGUGCGccaucgugagcaucuGCCUGCGGCgGGACc- -3'
miRNA:   3'- cucuACAUGC---------------UGGACGCCGgCCUGcu -5'
8963 5' -56.9 NC_002512.2 + 97368 0.68 0.883027
Target:  5'- gGAGcgGg--GACCgcgGCGGCCGGAgaCGGg -3'
miRNA:   3'- -CUCuaCaugCUGGa--CGCCGGCCU--GCU- -5'
8963 5' -56.9 NC_002512.2 + 196552 0.68 0.883027
Target:  5'- ----aGUGCGGcucCCUGCucccccucuccuGGCCGGACGGc -3'
miRNA:   3'- cucuaCAUGCU---GGACG------------CCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 149502 0.68 0.876197
Target:  5'- cGGGUGgucaaaaGGCC-GCGGCCGGAgCGGg -3'
miRNA:   3'- cUCUACaug----CUGGaCGCCGGCCU-GCU- -5'
8963 5' -56.9 NC_002512.2 + 228028 0.68 0.876197
Target:  5'- cGAGGg--GCGACCggacgGCGGCgagacgcccgCGGACGGc -3'
miRNA:   3'- -CUCUacaUGCUGGa----CGCCG----------GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 27940 0.68 0.874108
Target:  5'- gGAGAcgGUcucccACGuacccgggcccgucGCCgauggGCGGCCGGGCGAg -3'
miRNA:   3'- -CUCUa-CA-----UGC--------------UGGa----CGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 53486 0.68 0.861934
Target:  5'- cAGGUGccACGAC--GCGGCgCGGACGAu -3'
miRNA:   3'- cUCUACa-UGCUGgaCGCCG-GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 194747 0.68 0.854511
Target:  5'- -cGAUGUGau-CUUGCGGCCGGA-GAc -3'
miRNA:   3'- cuCUACAUgcuGGACGCCGGCCUgCU- -5'
8963 5' -56.9 NC_002512.2 + 96198 0.69 0.847671
Target:  5'- cGGGAg--GCGGCCgcgaggucggccacgGCGGCCGcGGCGGc -3'
miRNA:   3'- -CUCUacaUGCUGGa--------------CGCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 116834 0.69 0.846901
Target:  5'- -----uUGCGugCUGcCGGCCGuGACGAa -3'
miRNA:   3'- cucuacAUGCugGAC-GCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 212978 0.69 0.846901
Target:  5'- cGAGAUcUGCGACCUcaucgucgccGCGGCCGu-CGGg -3'
miRNA:   3'- -CUCUAcAUGCUGGA----------CGCCGGCcuGCU- -5'
8963 5' -56.9 NC_002512.2 + 153419 0.69 0.846901
Target:  5'- cGAGGUGgcggaaugGCGGCaggcCGGCCGGGCGc -3'
miRNA:   3'- -CUCUACa-------UGCUGgac-GCCGGCCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.