miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 5' -56.9 NC_002512.2 + 95829 0.66 0.93486
Target:  5'- aAGGUGgcgACGGCCcGCaggaGGCCGGggGCGGc -3'
miRNA:   3'- cUCUACa--UGCUGGaCG----CCGGCC--UGCU- -5'
8963 5' -56.9 NC_002512.2 + 77509 0.66 0.93486
Target:  5'- cAGAUGUcuACGACCggccaCGGCCGGuCu- -3'
miRNA:   3'- cUCUACA--UGCUGGac---GCCGGCCuGcu -5'
8963 5' -56.9 NC_002512.2 + 227466 0.66 0.929981
Target:  5'- gGGGAga---GGCCggggGCGGCCGGccGCGAg -3'
miRNA:   3'- -CUCUacaugCUGGa---CGCCGGCC--UGCU- -5'
8963 5' -56.9 NC_002512.2 + 228705 0.66 0.929981
Target:  5'- aGAGAgugcaaaggGUGCGAagaagaaCUGCGGagaCGGACGc -3'
miRNA:   3'- -CUCUa--------CAUGCUg------GACGCCg--GCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 123726 0.66 0.929981
Target:  5'- uGGAccUGUGCucgGACCUGCggGGUCGGACc- -3'
miRNA:   3'- cUCU--ACAUG---CUGGACG--CCGGCCUGcu -5'
8963 5' -56.9 NC_002512.2 + 133686 0.66 0.926947
Target:  5'- --cGUGgcCGACCUcGCGGCCgccucccggaccaccGGACGGu -3'
miRNA:   3'- cucUACauGCUGGA-CGCCGG---------------CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 13647 0.66 0.92488
Target:  5'- -uGAUG-ACGACCgucucgccGCGGCuccagcuccCGGACGAg -3'
miRNA:   3'- cuCUACaUGCUGGa-------CGCCG---------GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 90666 0.66 0.92488
Target:  5'- cGGAgucgGCGGCCgcgGCGGCCaGGGCc- -3'
miRNA:   3'- cUCUaca-UGCUGGa--CGCCGG-CCUGcu -5'
8963 5' -56.9 NC_002512.2 + 4984 0.67 0.921713
Target:  5'- gGAGGUGagACGGCgaacgggucgaagGCGGCCGG-CGAg -3'
miRNA:   3'- -CUCUACa-UGCUGga-----------CGCCGGCCuGCU- -5'
8963 5' -56.9 NC_002512.2 + 187995 0.67 0.919557
Target:  5'- -cGAUGcauCGAgaCUGUGGCCGGAgCGGg -3'
miRNA:   3'- cuCUACau-GCUg-GACGCCGGCCU-GCU- -5'
8963 5' -56.9 NC_002512.2 + 54399 0.67 0.919557
Target:  5'- ----aGUACGACgUGCGGaacgucCUGGACGGc -3'
miRNA:   3'- cucuaCAUGCUGgACGCC------GGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 55229 0.67 0.919557
Target:  5'- -uGAUcGUGCGgcACCUGgagaaCGuGCCGGACGAc -3'
miRNA:   3'- cuCUA-CAUGC--UGGAC-----GC-CGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 121152 0.67 0.919557
Target:  5'- cGAGAcgc-CGGCC-GCGGCCcaGGGCGAg -3'
miRNA:   3'- -CUCUacauGCUGGaCGCCGG--CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 225713 0.67 0.919557
Target:  5'- aGGAUGUGuCG-CCcGCGaGCCGcGGCGAc -3'
miRNA:   3'- cUCUACAU-GCuGGaCGC-CGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 81248 0.67 0.914012
Target:  5'- gGAGuccgGCGGCCUGCGGuuGaGGuCGAc -3'
miRNA:   3'- -CUCuacaUGCUGGACGCCggC-CU-GCU- -5'
8963 5' -56.9 NC_002512.2 + 191664 0.67 0.914012
Target:  5'- gGAGAcGUccGCGuCCcGgGGCUGGGCGAc -3'
miRNA:   3'- -CUCUaCA--UGCuGGaCgCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 139016 0.67 0.908247
Target:  5'- aGGggGUcCGACg-GCGGCgCGGACGGc -3'
miRNA:   3'- cUCuaCAuGCUGgaCGCCG-GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 5163 0.67 0.908247
Target:  5'- cAGcgGcGCGACCggggcgGCGGCCGGccccagcaggGCGGg -3'
miRNA:   3'- cUCuaCaUGCUGGa-----CGCCGGCC----------UGCU- -5'
8963 5' -56.9 NC_002512.2 + 133929 0.67 0.908247
Target:  5'- ---cUGUACGGCg-GCGGCCcGACGGc -3'
miRNA:   3'- cucuACAUGCUGgaCGCCGGcCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 98263 0.67 0.902264
Target:  5'- cGAGA---GCGuCUUcGUGGCCGGGCGGg -3'
miRNA:   3'- -CUCUacaUGCuGGA-CGCCGGCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.