Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8963 | 5' | -56.9 | NC_002512.2 | + | 89568 | 0.69 | 0.814719 |
Target: 5'- -cGAUGUAaagcucGCCUGCGGCgGGugGc -3' miRNA: 3'- cuCUACAUgc----UGGACGCCGgCCugCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 30764 | 0.69 | 0.831146 |
Target: 5'- uGAGGacgcUGUACGACCUGCuGCagaGGGUGAa -3' miRNA: 3'- -CUCU----ACAUGCUGGACGcCGg--CCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 222707 | 0.69 | 0.839111 |
Target: 5'- gGAGGaGUGCGucgccACCUGCcuGCUGGACGGc -3' miRNA: 3'- -CUCUaCAUGC-----UGGACGc-CGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 92532 | 0.69 | 0.839111 |
Target: 5'- cGGAUcUAccCGGCCgcgGCGGCCGcGGCGAc -3' miRNA: 3'- cUCUAcAU--GCUGGa--CGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 74537 | 0.69 | 0.839111 |
Target: 5'- -cGAgGUACaGCCagGCGGCCGcGGCGAc -3' miRNA: 3'- cuCUaCAUGcUGGa-CGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 212978 | 0.69 | 0.846901 |
Target: 5'- cGAGAUcUGCGACCUcaucgucgccGCGGCCGu-CGGg -3' miRNA: 3'- -CUCUAcAUGCUGGA----------CGCCGGCcuGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 116834 | 0.69 | 0.846901 |
Target: 5'- -----uUGCGugCUGcCGGCCGuGACGAa -3' miRNA: 3'- cucuacAUGCugGAC-GCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 153419 | 0.69 | 0.846901 |
Target: 5'- cGAGGUGgcggaaugGCGGCaggcCGGCCGGGCGc -3' miRNA: 3'- -CUCUACa-------UGCUGgac-GCCGGCCUGCu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 96198 | 0.69 | 0.847671 |
Target: 5'- cGGGAg--GCGGCCgcgaggucggccacgGCGGCCGcGGCGGc -3' miRNA: 3'- -CUCUacaUGCUGGa--------------CGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 194747 | 0.68 | 0.854511 |
Target: 5'- -cGAUGUGau-CUUGCGGCCGGA-GAc -3' miRNA: 3'- cuCUACAUgcuGGACGCCGGCCUgCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 53486 | 0.68 | 0.861934 |
Target: 5'- cAGGUGccACGAC--GCGGCgCGGACGAu -3' miRNA: 3'- cUCUACa-UGCUGgaCGCCG-GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 27940 | 0.68 | 0.874108 |
Target: 5'- gGAGAcgGUcucccACGuacccgggcccgucGCCgauggGCGGCCGGGCGAg -3' miRNA: 3'- -CUCUa-CA-----UGC--------------UGGa----CGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 149502 | 0.68 | 0.876197 |
Target: 5'- cGGGUGgucaaaaGGCC-GCGGCCGGAgCGGg -3' miRNA: 3'- cUCUACaug----CUGGaCGCCGGCCU-GCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 228028 | 0.68 | 0.876197 |
Target: 5'- cGAGGg--GCGACCggacgGCGGCgagacgcccgCGGACGGc -3' miRNA: 3'- -CUCUacaUGCUGGa----CGCCG----------GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 196552 | 0.68 | 0.883027 |
Target: 5'- ----aGUGCGGcucCCUGCucccccucuccuGGCCGGACGGc -3' miRNA: 3'- cucuaCAUGCU---GGACG------------CCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 97368 | 0.68 | 0.883027 |
Target: 5'- gGAGcgGg--GACCgcgGCGGCCGGAgaCGGg -3' miRNA: 3'- -CUCuaCaugCUGGa--CGCCGGCCU--GCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 59432 | 0.68 | 0.885702 |
Target: 5'- ---cUGUGCGccaucgugagcaucuGCCUGCGGCgGGACc- -3' miRNA: 3'- cucuACAUGC---------------UGGACGCCGgCCUGcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 137039 | 0.68 | 0.889651 |
Target: 5'- aGGGGUGgcCGACCgggGaCGGCCagGGAgGAg -3' miRNA: 3'- -CUCUACauGCUGGa--C-GCCGG--CCUgCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 175881 | 0.68 | 0.889651 |
Target: 5'- cGGGAUGUuguccACGuagcucACCaGCGGCUGcGACGAg -3' miRNA: 3'- -CUCUACA-----UGC------UGGaCGCCGGC-CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 159924 | 0.67 | 0.895433 |
Target: 5'- gGGGGccuUGUGCGAuacguccCCgGUGGCCGGACc- -3' miRNA: 3'- -CUCU---ACAUGCU-------GGaCGCCGGCCUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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