miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 5' -56.9 NC_002512.2 + 209614 1.09 0.003937
Target:  5'- cGAGAUGUACGACCUGCGGCCGGACGAg -3'
miRNA:   3'- -CUCUACAUGCUGGACGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 31323 0.79 0.320234
Target:  5'- aGGAUGUACGACCUGgacagcgcccUGGCCGGcuACGAc -3'
miRNA:   3'- cUCUACAUGCUGGAC----------GCCGGCC--UGCU- -5'
8963 5' -56.9 NC_002512.2 + 60730 0.79 0.334531
Target:  5'- aAGuAUGUauaaccGCGACCgcgGCGGCCGGGCGGa -3'
miRNA:   3'- cUC-UACA------UGCUGGa--CGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 48994 0.75 0.520236
Target:  5'- gGAGcUGgaagACGGCCUGCGGUucgugacgaacgCGGACGAa -3'
miRNA:   3'- -CUCuACa---UGCUGGACGCCG------------GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 89667 0.73 0.607348
Target:  5'- cGAGAcgcgGUGCGAag-GCGGCgGGGCGAg -3'
miRNA:   3'- -CUCUa---CAUGCUggaCGCCGgCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 2100 0.73 0.607348
Target:  5'- cGGGcgGUACGGCC-GCGGCuCGGucGCGGg -3'
miRNA:   3'- -CUCuaCAUGCUGGaCGCCG-GCC--UGCU- -5'
8963 5' -56.9 NC_002512.2 + 49178 0.72 0.656613
Target:  5'- aGGGAccUGUGCGACgaGCGGauccaguacaaCCGGGCGGc -3'
miRNA:   3'- -CUCU--ACAUGCUGgaCGCC-----------GGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 7921 0.72 0.656613
Target:  5'- -cGGUcGaACGACCuccgguuucguUGCGGCCGGGCGGa -3'
miRNA:   3'- cuCUA-CaUGCUGG-----------ACGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 122632 0.72 0.666441
Target:  5'- cGAGuAUGgaaACGcACCUGCGuuucgaGCCGGACGAc -3'
miRNA:   3'- -CUC-UACa--UGC-UGGACGC------CGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 113149 0.71 0.705416
Target:  5'- cGGGgcGc-CGGCCUcgccGCGGCCGGGCGGg -3'
miRNA:   3'- -CUCuaCauGCUGGA----CGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 144649 0.71 0.705416
Target:  5'- cGGAUcUACGACCaccuguucGCGGuCCGGGCGAg -3'
miRNA:   3'- cUCUAcAUGCUGGa-------CGCC-GGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 190653 0.71 0.751852
Target:  5'- aGAGGUGgACGguacagucgggacACCUGCGGCUGGAg-- -3'
miRNA:   3'- -CUCUACaUGC-------------UGGACGCCGGCCUgcu -5'
8963 5' -56.9 NC_002512.2 + 45190 0.71 0.752778
Target:  5'- gGAGGUcu-CGACCgggaccgGCGGCgCGGACGGc -3'
miRNA:   3'- -CUCUAcauGCUGGa------CGCCG-GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 122016 0.7 0.761988
Target:  5'- aAGGUGacgACGGCCUccacGCGGuCCGGACa- -3'
miRNA:   3'- cUCUACa--UGCUGGA----CGCC-GGCCUGcu -5'
8963 5' -56.9 NC_002512.2 + 122676 0.7 0.788942
Target:  5'- cAGGUG-ACGGCgaGgGGCCcGGGCGAg -3'
miRNA:   3'- cUCUACaUGCUGgaCgCCGG-CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 200655 0.7 0.797676
Target:  5'- cGGAcUGcGCGACCcGCGGCCGG-CGu -3'
miRNA:   3'- cUCU-ACaUGCUGGaCGCCGGCCuGCu -5'
8963 5' -56.9 NC_002512.2 + 119099 0.69 0.805418
Target:  5'- gGAGGUGcggGCGGCCU-CGGCgcagcugCGGACGGu -3'
miRNA:   3'- -CUCUACa--UGCUGGAcGCCG-------GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 119494 0.69 0.80627
Target:  5'- -uGGUGUGCGACaucucGCCGGACGAc -3'
miRNA:   3'- cuCUACAUGCUGgacgcCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 159131 0.69 0.813041
Target:  5'- cAGAaGcGCGGCCgcuccaagugagGCGGCCGGGCGc -3'
miRNA:   3'- cUCUaCaUGCUGGa-----------CGCCGGCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 131733 0.69 0.814719
Target:  5'- cAGAcGcgGCGACCgccggggcggGCGGCCGcGACGAc -3'
miRNA:   3'- cUCUaCa-UGCUGGa---------CGCCGGC-CUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.