Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8963 | 5' | -56.9 | NC_002512.2 | + | 2100 | 0.73 | 0.607348 |
Target: 5'- cGGGcgGUACGGCC-GCGGCuCGGucGCGGg -3' miRNA: 3'- -CUCuaCAUGCUGGaCGCCG-GCC--UGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 4984 | 0.67 | 0.921713 |
Target: 5'- gGAGGUGagACGGCgaacgggucgaagGCGGCCGG-CGAg -3' miRNA: 3'- -CUCUACa-UGCUGga-----------CGCCGGCCuGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 5163 | 0.67 | 0.908247 |
Target: 5'- cAGcgGcGCGACCggggcgGCGGCCGGccccagcaggGCGGg -3' miRNA: 3'- cUCuaCaUGCUGGa-----CGCCGGCC----------UGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 7921 | 0.72 | 0.656613 |
Target: 5'- -cGGUcGaACGACCuccgguuucguUGCGGCCGGGCGGa -3' miRNA: 3'- cuCUA-CaUGCUGG-----------ACGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 13647 | 0.66 | 0.92488 |
Target: 5'- -uGAUG-ACGACCgucucgccGCGGCuccagcuccCGGACGAg -3' miRNA: 3'- cuCUACaUGCUGGa-------CGCCG---------GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 18086 | 0.66 | 0.939519 |
Target: 5'- ----gGUGCG-CC-GCGGCgGGACGGc -3' miRNA: 3'- cucuaCAUGCuGGaCGCCGgCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 27940 | 0.68 | 0.874108 |
Target: 5'- gGAGAcgGUcucccACGuacccgggcccgucGCCgauggGCGGCCGGGCGAg -3' miRNA: 3'- -CUCUa-CA-----UGC--------------UGGa----CGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 30764 | 0.69 | 0.831146 |
Target: 5'- uGAGGacgcUGUACGACCUGCuGCagaGGGUGAa -3' miRNA: 3'- -CUCU----ACAUGCUGGACGcCGg--CCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 31323 | 0.79 | 0.320234 |
Target: 5'- aGGAUGUACGACCUGgacagcgcccUGGCCGGcuACGAc -3' miRNA: 3'- cUCUACAUGCUGGAC----------GCCGGCC--UGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 45190 | 0.71 | 0.752778 |
Target: 5'- gGAGGUcu-CGACCgggaccgGCGGCgCGGACGGc -3' miRNA: 3'- -CUCUAcauGCUGGa------CGCCG-GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 48994 | 0.75 | 0.520236 |
Target: 5'- gGAGcUGgaagACGGCCUGCGGUucgugacgaacgCGGACGAa -3' miRNA: 3'- -CUCuACa---UGCUGGACGCCG------------GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 49178 | 0.72 | 0.656613 |
Target: 5'- aGGGAccUGUGCGACgaGCGGauccaguacaaCCGGGCGGc -3' miRNA: 3'- -CUCU--ACAUGCUGgaCGCC-----------GGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 53486 | 0.68 | 0.861934 |
Target: 5'- cAGGUGccACGAC--GCGGCgCGGACGAu -3' miRNA: 3'- cUCUACa-UGCUGgaCGCCG-GCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 54399 | 0.67 | 0.919557 |
Target: 5'- ----aGUACGACgUGCGGaacgucCUGGACGGc -3' miRNA: 3'- cucuaCAUGCUGgACGCC------GGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 55229 | 0.67 | 0.919557 |
Target: 5'- -uGAUcGUGCGgcACCUGgagaaCGuGCCGGACGAc -3' miRNA: 3'- cuCUA-CAUGC--UGGAC-----GC-CGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 57039 | 0.66 | 0.948177 |
Target: 5'- gGAGGccgcGUccgACGACCgggGgGcGCCGGGCGAa -3' miRNA: 3'- -CUCUa---CA---UGCUGGa--CgC-CGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 57613 | 0.66 | 0.948177 |
Target: 5'- cAGAUGUcccggGCGACCgaGCGGgCGugaGGCGAg -3' miRNA: 3'- cUCUACA-----UGCUGGa-CGCCgGC---CUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 59432 | 0.68 | 0.885702 |
Target: 5'- ---cUGUGCGccaucgugagcaucuGCCUGCGGCgGGACc- -3' miRNA: 3'- cucuACAUGC---------------UGGACGCCGgCCUGcu -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 60730 | 0.79 | 0.334531 |
Target: 5'- aAGuAUGUauaaccGCGACCgcgGCGGCCGGGCGGa -3' miRNA: 3'- cUC-UACA------UGCUGGa--CGCCGGCCUGCU- -5' |
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8963 | 5' | -56.9 | NC_002512.2 | + | 74537 | 0.69 | 0.839111 |
Target: 5'- -cGAgGUACaGCCagGCGGCCGcGGCGAc -3' miRNA: 3'- cuCUaCAUGcUGGa-CGCCGGC-CUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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