miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 5' -56.9 NC_002512.2 + 228705 0.66 0.929981
Target:  5'- aGAGAgugcaaaggGUGCGAagaagaaCUGCGGagaCGGACGc -3'
miRNA:   3'- -CUCUa--------CAUGCUg------GACGCCg--GCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 228028 0.68 0.876197
Target:  5'- cGAGGg--GCGACCggacgGCGGCgagacgcccgCGGACGGc -3'
miRNA:   3'- -CUCUacaUGCUGGa----CGCCG----------GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 227466 0.66 0.929981
Target:  5'- gGGGAga---GGCCggggGCGGCCGGccGCGAg -3'
miRNA:   3'- -CUCUacaugCUGGa---CGCCGGCC--UGCU- -5'
8963 5' -56.9 NC_002512.2 + 225713 0.67 0.919557
Target:  5'- aGGAUGUGuCG-CCcGCGaGCCGcGGCGAc -3'
miRNA:   3'- cUCUACAU-GCuGGaCGC-CGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 222707 0.69 0.839111
Target:  5'- gGAGGaGUGCGucgccACCUGCcuGCUGGACGGc -3'
miRNA:   3'- -CUCUaCAUGC-----UGGACGc-CGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 212978 0.69 0.846901
Target:  5'- cGAGAUcUGCGACCUcaucgucgccGCGGCCGu-CGGg -3'
miRNA:   3'- -CUCUAcAUGCUGGA----------CGCCGGCcuGCU- -5'
8963 5' -56.9 NC_002512.2 + 209614 1.09 0.003937
Target:  5'- cGAGAUGUACGACCUGCGGCCGGACGAg -3'
miRNA:   3'- -CUCUACAUGCUGGACGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 204869 0.66 0.93486
Target:  5'- gGAGGUccGCGACCgacgGCGaGCucuCGGACGGc -3'
miRNA:   3'- -CUCUAcaUGCUGGa---CGC-CG---GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 204135 0.66 0.946933
Target:  5'- aGGGccucUACGACCUgGCGGCCuaucucucggcuaaGGACGGc -3'
miRNA:   3'- -CUCuac-AUGCUGGA-CGCCGG--------------CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 200655 0.7 0.797676
Target:  5'- cGGAcUGcGCGACCcGCGGCCGG-CGu -3'
miRNA:   3'- cUCU-ACaUGCUGGaCGCCGGCCuGCu -5'
8963 5' -56.9 NC_002512.2 + 196552 0.68 0.883027
Target:  5'- ----aGUGCGGcucCCUGCucccccucuccuGGCCGGACGGc -3'
miRNA:   3'- cucuaCAUGCU---GGACG------------CCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 194747 0.68 0.854511
Target:  5'- -cGAUGUGau-CUUGCGGCCGGA-GAc -3'
miRNA:   3'- cuCUACAUgcuGGACGCCGGCCUgCU- -5'
8963 5' -56.9 NC_002512.2 + 192060 0.66 0.939519
Target:  5'- -----uUGCGACCUGUacGGCuCGGACGc -3'
miRNA:   3'- cucuacAUGCUGGACG--CCG-GCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 191664 0.67 0.914012
Target:  5'- gGAGAcGUccGCGuCCcGgGGCUGGGCGAc -3'
miRNA:   3'- -CUCUaCA--UGCuGGaCgCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 190653 0.71 0.751852
Target:  5'- aGAGGUGgACGguacagucgggacACCUGCGGCUGGAg-- -3'
miRNA:   3'- -CUCUACaUGC-------------UGGACGCCGGCCUgcu -5'
8963 5' -56.9 NC_002512.2 + 187995 0.67 0.919557
Target:  5'- -cGAUGcauCGAgaCUGUGGCCGGAgCGGg -3'
miRNA:   3'- cuCUACau-GCUg-GACGCCGGCCU-GCU- -5'
8963 5' -56.9 NC_002512.2 + 175881 0.68 0.889651
Target:  5'- cGGGAUGUuguccACGuagcucACCaGCGGCUGcGACGAg -3'
miRNA:   3'- -CUCUACA-----UGC------UGGaCGCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 171844 0.67 0.896064
Target:  5'- cGGGAcgGUcCGGCC-GCGGCCGGgaggggGCGGa -3'
miRNA:   3'- -CUCUa-CAuGCUGGaCGCCGGCC------UGCU- -5'
8963 5' -56.9 NC_002512.2 + 165567 0.66 0.939519
Target:  5'- cAGGUcgGCGACgUgGUGGCCGGGCa- -3'
miRNA:   3'- cUCUAcaUGCUGgA-CGCCGGCCUGcu -5'
8963 5' -56.9 NC_002512.2 + 159924 0.67 0.895433
Target:  5'- gGGGGccuUGUGCGAuacguccCCgGUGGCCGGACc- -3'
miRNA:   3'- -CUCU---ACAUGCU-------GGaCGCCGGCCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.