miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 5' -56.9 NC_002512.2 + 5163 0.67 0.908247
Target:  5'- cAGcgGcGCGACCggggcgGCGGCCGGccccagcaggGCGGg -3'
miRNA:   3'- cUCuaCaUGCUGGa-----CGCCGGCC----------UGCU- -5'
8963 5' -56.9 NC_002512.2 + 194747 0.68 0.854511
Target:  5'- -cGAUGUGau-CUUGCGGCCGGA-GAc -3'
miRNA:   3'- cuCUACAUgcuGGACGCCGGCCUgCU- -5'
8963 5' -56.9 NC_002512.2 + 53486 0.68 0.861934
Target:  5'- cAGGUGccACGAC--GCGGCgCGGACGAu -3'
miRNA:   3'- cUCUACa-UGCUGgaCGCCG-GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 27940 0.68 0.874108
Target:  5'- gGAGAcgGUcucccACGuacccgggcccgucGCCgauggGCGGCCGGGCGAg -3'
miRNA:   3'- -CUCUa-CA-----UGC--------------UGGa----CGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 97368 0.68 0.883027
Target:  5'- gGAGcgGg--GACCgcgGCGGCCGGAgaCGGg -3'
miRNA:   3'- -CUCuaCaugCUGGa--CGCCGGCCU--GCU- -5'
8963 5' -56.9 NC_002512.2 + 59432 0.68 0.885702
Target:  5'- ---cUGUGCGccaucgugagcaucuGCCUGCGGCgGGACc- -3'
miRNA:   3'- cucuACAUGC---------------UGGACGCCGgCCUGcu -5'
8963 5' -56.9 NC_002512.2 + 137039 0.68 0.889651
Target:  5'- aGGGGUGgcCGACCgggGaCGGCCagGGAgGAg -3'
miRNA:   3'- -CUCUACauGCUGGa--C-GCCGG--CCUgCU- -5'
8963 5' -56.9 NC_002512.2 + 98263 0.67 0.902264
Target:  5'- cGAGA---GCGuCUUcGUGGCCGGGCGGg -3'
miRNA:   3'- -CUCUacaUGCuGGA-CGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 133929 0.67 0.908247
Target:  5'- ---cUGUACGGCg-GCGGCCcGACGGc -3'
miRNA:   3'- cucuACAUGCUGgaCGCCGGcCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 74537 0.69 0.839111
Target:  5'- -cGAgGUACaGCCagGCGGCCGcGGCGAc -3'
miRNA:   3'- cuCUaCAUGcUGGa-CGCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 30764 0.69 0.831146
Target:  5'- uGAGGacgcUGUACGACCUGCuGCagaGGGUGAa -3'
miRNA:   3'- -CUCU----ACAUGCUGGACGcCGg--CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 131733 0.69 0.814719
Target:  5'- cAGAcGcgGCGACCgccggggcggGCGGCCGcGACGAc -3'
miRNA:   3'- cUCUaCa-UGCUGGa---------CGCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 60730 0.79 0.334531
Target:  5'- aAGuAUGUauaaccGCGACCgcgGCGGCCGGGCGGa -3'
miRNA:   3'- cUC-UACA------UGCUGGa--CGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 48994 0.75 0.520236
Target:  5'- gGAGcUGgaagACGGCCUGCGGUucgugacgaacgCGGACGAa -3'
miRNA:   3'- -CUCuACa---UGCUGGACGCCG------------GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 2100 0.73 0.607348
Target:  5'- cGGGcgGUACGGCC-GCGGCuCGGucGCGGg -3'
miRNA:   3'- -CUCuaCAUGCUGGaCGCCG-GCC--UGCU- -5'
8963 5' -56.9 NC_002512.2 + 89667 0.73 0.607348
Target:  5'- cGAGAcgcgGUGCGAag-GCGGCgGGGCGAg -3'
miRNA:   3'- -CUCUa---CAUGCUggaCGCCGgCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 49178 0.72 0.656613
Target:  5'- aGGGAccUGUGCGACgaGCGGauccaguacaaCCGGGCGGc -3'
miRNA:   3'- -CUCU--ACAUGCUGgaCGCC-----------GGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 122632 0.72 0.666441
Target:  5'- cGAGuAUGgaaACGcACCUGCGuuucgaGCCGGACGAc -3'
miRNA:   3'- -CUC-UACa--UGC-UGGACGC------CGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 45190 0.71 0.752778
Target:  5'- gGAGGUcu-CGACCgggaccgGCGGCgCGGACGGc -3'
miRNA:   3'- -CUCUAcauGCUGGa------CGCCG-GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 89568 0.69 0.814719
Target:  5'- -cGAUGUAaagcucGCCUGCGGCgGGugGc -3'
miRNA:   3'- cuCUACAUgc----UGGACGCCGgCCugCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.