miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 5' -56.9 NC_002512.2 + 146938 0.66 0.948177
Target:  5'- ------cGCGACCUGCuGGCCGugaagcgcGACGAc -3'
miRNA:   3'- cucuacaUGCUGGACG-CCGGC--------CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 96726 0.67 0.902264
Target:  5'- -cGcgGgcCGGCCcGCGGgaaCCGGACGAg -3'
miRNA:   3'- cuCuaCauGCUGGaCGCC---GGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 156498 0.67 0.896064
Target:  5'- uGGGcgGacacgGCGGCCUggGCGGCgGGGCGc -3'
miRNA:   3'- -CUCuaCa----UGCUGGA--CGCCGgCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 209614 1.09 0.003937
Target:  5'- cGAGAUGUACGACCUGCGGCCGGACGAg -3'
miRNA:   3'- -CUCUACAUGCUGGACGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 165567 0.66 0.939519
Target:  5'- cAGGUcgGCGACgUgGUGGCCGGGCa- -3'
miRNA:   3'- cUCUAcaUGCUGgA-CGCCGGCCUGcu -5'
8963 5' -56.9 NC_002512.2 + 111278 0.66 0.939519
Target:  5'- -uGAUGUcgACGuCCcGCGGCCaGACGc -3'
miRNA:   3'- cuCUACA--UGCuGGaCGCCGGcCUGCu -5'
8963 5' -56.9 NC_002512.2 + 101422 0.66 0.93486
Target:  5'- cGAGGgcacagcgGCGGCCgGCGGCgCGG-CGAc -3'
miRNA:   3'- -CUCUaca-----UGCUGGaCGCCG-GCCuGCU- -5'
8963 5' -56.9 NC_002512.2 + 95829 0.66 0.93486
Target:  5'- aAGGUGgcgACGGCCcGCaggaGGCCGGggGCGGc -3'
miRNA:   3'- cUCUACa--UGCUGGaCG----CCGGCC--UGCU- -5'
8963 5' -56.9 NC_002512.2 + 90666 0.66 0.92488
Target:  5'- cGGAgucgGCGGCCgcgGCGGCCaGGGCc- -3'
miRNA:   3'- cUCUaca-UGCUGGa--CGCCGG-CCUGcu -5'
8963 5' -56.9 NC_002512.2 + 158972 0.67 0.902264
Target:  5'- cGAGcgGUucgGCGGCCa-CGGCgGGGCGGa -3'
miRNA:   3'- -CUCuaCA---UGCUGGacGCCGgCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 121152 0.67 0.919557
Target:  5'- cGAGAcgc-CGGCC-GCGGCCcaGGGCGAg -3'
miRNA:   3'- -CUCUacauGCUGGaCGCCGG--CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 227466 0.66 0.929981
Target:  5'- gGGGAga---GGCCggggGCGGCCGGccGCGAg -3'
miRNA:   3'- -CUCUacaugCUGGa---CGCCGGCC--UGCU- -5'
8963 5' -56.9 NC_002512.2 + 117694 0.66 0.948177
Target:  5'- cGAGcUGcgugGCGcACCUGCGGCgGGugcgcaGCGAc -3'
miRNA:   3'- -CUCuACa---UGC-UGGACGCCGgCC------UGCU- -5'
8963 5' -56.9 NC_002512.2 + 191664 0.67 0.914012
Target:  5'- gGAGAcGUccGCGuCCcGgGGCUGGGCGAc -3'
miRNA:   3'- -CUCUaCA--UGCuGGaCgCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 204135 0.66 0.946933
Target:  5'- aGGGccucUACGACCUgGCGGCCuaucucucggcuaaGGACGGc -3'
miRNA:   3'- -CUCuac-AUGCUGGA-CGCCGG--------------CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 204869 0.66 0.93486
Target:  5'- gGAGGUccGCGACCgacgGCGaGCucuCGGACGGc -3'
miRNA:   3'- -CUCUAcaUGCUGGa---CGC-CG---GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 111218 0.67 0.902264
Target:  5'- cGGGAcagacgAUGACggGCGGCCGGGCGc -3'
miRNA:   3'- -CUCUaca---UGCUGgaCGCCGGCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 171844 0.67 0.896064
Target:  5'- cGGGAcgGUcCGGCC-GCGGCCGGgaggggGCGGa -3'
miRNA:   3'- -CUCUa-CAuGCUGGaCGCCGGCC------UGCU- -5'
8963 5' -56.9 NC_002512.2 + 145556 0.66 0.943957
Target:  5'- cGAGGacgcgGCGACgCUGCGGCgCGcGACGc -3'
miRNA:   3'- -CUCUaca--UGCUG-GACGCCG-GC-CUGCu -5'
8963 5' -56.9 NC_002512.2 + 192060 0.66 0.939519
Target:  5'- -----uUGCGACCUGUacGGCuCGGACGc -3'
miRNA:   3'- cucuacAUGCUGGACG--CCG-GCCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.