miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 5' -56.9 NC_002512.2 + 77509 0.66 0.93486
Target:  5'- cAGAUGUcuACGACCggccaCGGCCGGuCu- -3'
miRNA:   3'- cUCUACA--UGCUGGac---GCCGGCCuGcu -5'
8963 5' -56.9 NC_002512.2 + 79377 0.66 0.943957
Target:  5'- uGGAacUGcacccCGACCcGCGGgCGGACGAg -3'
miRNA:   3'- cUCU--ACau---GCUGGaCGCCgGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 80878 0.66 0.939519
Target:  5'- cGGGcgGUccgcgGCGGCCcccCGGCCGGugGu -3'
miRNA:   3'- -CUCuaCA-----UGCUGGac-GCCGGCCugCu -5'
8963 5' -56.9 NC_002512.2 + 81248 0.67 0.914012
Target:  5'- gGAGuccgGCGGCCUGCGGuuGaGGuCGAc -3'
miRNA:   3'- -CUCuacaUGCUGGACGCCggC-CU-GCU- -5'
8963 5' -56.9 NC_002512.2 + 89568 0.69 0.814719
Target:  5'- -cGAUGUAaagcucGCCUGCGGCgGGugGc -3'
miRNA:   3'- cuCUACAUgc----UGGACGCCGgCCugCu -5'
8963 5' -56.9 NC_002512.2 + 89667 0.73 0.607348
Target:  5'- cGAGAcgcgGUGCGAag-GCGGCgGGGCGAg -3'
miRNA:   3'- -CUCUa---CAUGCUggaCGCCGgCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 90666 0.66 0.92488
Target:  5'- cGGAgucgGCGGCCgcgGCGGCCaGGGCc- -3'
miRNA:   3'- cUCUaca-UGCUGGa--CGCCGG-CCUGcu -5'
8963 5' -56.9 NC_002512.2 + 92532 0.69 0.839111
Target:  5'- cGGAUcUAccCGGCCgcgGCGGCCGcGGCGAc -3'
miRNA:   3'- cUCUAcAU--GCUGGa--CGCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 95829 0.66 0.93486
Target:  5'- aAGGUGgcgACGGCCcGCaggaGGCCGGggGCGGc -3'
miRNA:   3'- cUCUACa--UGCUGGaCG----CCGGCC--UGCU- -5'
8963 5' -56.9 NC_002512.2 + 96198 0.69 0.847671
Target:  5'- cGGGAg--GCGGCCgcgaggucggccacgGCGGCCGcGGCGGc -3'
miRNA:   3'- -CUCUacaUGCUGGa--------------CGCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 96726 0.67 0.902264
Target:  5'- -cGcgGgcCGGCCcGCGGgaaCCGGACGAg -3'
miRNA:   3'- cuCuaCauGCUGGaCGCC---GGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 97368 0.68 0.883027
Target:  5'- gGAGcgGg--GACCgcgGCGGCCGGAgaCGGg -3'
miRNA:   3'- -CUCuaCaugCUGGa--CGCCGGCCU--GCU- -5'
8963 5' -56.9 NC_002512.2 + 98263 0.67 0.902264
Target:  5'- cGAGA---GCGuCUUcGUGGCCGGGCGGg -3'
miRNA:   3'- -CUCUacaUGCuGGA-CGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 101422 0.66 0.93486
Target:  5'- cGAGGgcacagcgGCGGCCgGCGGCgCGG-CGAc -3'
miRNA:   3'- -CUCUaca-----UGCUGGaCGCCG-GCCuGCU- -5'
8963 5' -56.9 NC_002512.2 + 111218 0.67 0.902264
Target:  5'- cGGGAcagacgAUGACggGCGGCCGGGCGc -3'
miRNA:   3'- -CUCUaca---UGCUGgaCGCCGGCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 111278 0.66 0.939519
Target:  5'- -uGAUGUcgACGuCCcGCGGCCaGACGc -3'
miRNA:   3'- cuCUACA--UGCuGGaCGCCGGcCUGCu -5'
8963 5' -56.9 NC_002512.2 + 111897 0.66 0.943957
Target:  5'- --cAUGgACGACgaGCGGCCGcGCGGg -3'
miRNA:   3'- cucUACaUGCUGgaCGCCGGCcUGCU- -5'
8963 5' -56.9 NC_002512.2 + 113149 0.71 0.705416
Target:  5'- cGGGgcGc-CGGCCUcgccGCGGCCGGGCGGg -3'
miRNA:   3'- -CUCuaCauGCUGGA----CGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 116834 0.69 0.846901
Target:  5'- -----uUGCGugCUGcCGGCCGuGACGAa -3'
miRNA:   3'- cucuacAUGCugGAC-GCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 117694 0.66 0.948177
Target:  5'- cGAGcUGcgugGCGcACCUGCGGCgGGugcgcaGCGAc -3'
miRNA:   3'- -CUCuACa---UGC-UGGACGCCGgCC------UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.