miRNA display CGI


Results 41 - 60 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 119229 0.66 0.883501
Target:  5'- aCCGGCugCCCgCGGUCGAG-CGG-CGg-- -3'
miRNA:   3'- -GGCCG--GGG-GCUAGCUCaGCCuGCagc -5'
8964 3' -60 NC_002512.2 + 7708 0.66 0.876982
Target:  5'- gCCGGCCgcggCCCGG--GAGUa-GGCGUCGg -3'
miRNA:   3'- -GGCCGG----GGGCUagCUCAgcCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 99425 0.66 0.876982
Target:  5'- uCC-GCCCCCGcUCcuGUCGGACGa-- -3'
miRNA:   3'- -GGcCGGGGGCuAGcuCAGCCUGCagc -5'
8964 3' -60 NC_002512.2 + 81956 0.66 0.876982
Target:  5'- gCCGGCgcgcggugagCCCCGggCGGGUgGuGGCGgCGg -3'
miRNA:   3'- -GGCCG----------GGGGCuaGCUCAgC-CUGCaGC- -5'
8964 3' -60 NC_002512.2 + 112642 0.66 0.876982
Target:  5'- uUGGCCgCCagGGUCGGGUCGGA-GUa- -3'
miRNA:   3'- gGCCGG-GGg-CUAGCUCAGCCUgCAgc -5'
8964 3' -60 NC_002512.2 + 188266 0.66 0.876982
Target:  5'- gCUGGCCCCCaacaccgaGGUCGAGUucaCGGcCGg-- -3'
miRNA:   3'- -GGCCGGGGG--------CUAGCUCA---GCCuGCagc -5'
8964 3' -60 NC_002512.2 + 127825 0.66 0.870277
Target:  5'- cCCGGCUCCgGGagGucGUCGGcgGCGUCc -3'
miRNA:   3'- -GGCCGGGGgCUagCu-CAGCC--UGCAGc -5'
8964 3' -60 NC_002512.2 + 143803 0.66 0.870277
Target:  5'- gCCGGCUguucuCCCGGUCcaugucgauGAGcCGGACGaUCu -3'
miRNA:   3'- -GGCCGG-----GGGCUAG---------CUCaGCCUGC-AGc -5'
8964 3' -60 NC_002512.2 + 103447 0.66 0.870277
Target:  5'- cCCGGUCCgaGcgCGGGUCcgaGGACG-CGg -3'
miRNA:   3'- -GGCCGGGggCuaGCUCAG---CCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 114619 0.66 0.870277
Target:  5'- cCCGGCCaggcgcucCCCGccgccuAUCGuGUaGGugGUCGg -3'
miRNA:   3'- -GGCCGG--------GGGC------UAGCuCAgCCugCAGC- -5'
8964 3' -60 NC_002512.2 + 90471 0.66 0.870277
Target:  5'- gCgGGUCCCCGAUCaccg-GGGCGUCc -3'
miRNA:   3'- -GgCCGGGGGCUAGcucagCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 153921 0.66 0.870277
Target:  5'- aCGGUUCCgUGcauUCGAGUCgagaacguucggGGACGUCGg -3'
miRNA:   3'- gGCCGGGG-GCu--AGCUCAG------------CCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 128572 0.66 0.868914
Target:  5'- aCGGCCUCCGGgggccgacccugCGAGaggccgGGACGUCc -3'
miRNA:   3'- gGCCGGGGGCUa-----------GCUCag----CCUGCAGc -5'
8964 3' -60 NC_002512.2 + 176117 0.67 0.866167
Target:  5'- gCUGGgCCUCGAagucuaauccguaucUCGAuccgCGGACGUCGc -3'
miRNA:   3'- -GGCCgGGGGCU---------------AGCUca--GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 116750 0.67 0.864088
Target:  5'- gCCGGCgCCCCGcgCGcGUCuccgaggagaggcacGACGUCa -3'
miRNA:   3'- -GGCCG-GGGGCuaGCuCAGc--------------CUGCAGc -5'
8964 3' -60 NC_002512.2 + 41203 0.67 0.863391
Target:  5'- gCCGugaucGUCCCCGAgacCGccgcGGUCGGACGaCGg -3'
miRNA:   3'- -GGC-----CGGGGGCUa--GC----UCAGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 50891 0.67 0.863391
Target:  5'- gCUGGCCCguUCGAggggacgucCGAGUCGGACuUCc -3'
miRNA:   3'- -GGCCGGG--GGCUa--------GCUCAGCCUGcAGc -5'
8964 3' -60 NC_002512.2 + 193660 0.67 0.863391
Target:  5'- gCCGucGUCCUCGGgaccgucucCGAGUCGGACcUCGg -3'
miRNA:   3'- -GGC--CGGGGGCUa--------GCUCAGCCUGcAGC- -5'
8964 3' -60 NC_002512.2 + 83108 0.67 0.863391
Target:  5'- uCCGGCggUCCGGcgUCG-GUCGGGuCGUCGu -3'
miRNA:   3'- -GGCCGg-GGGCU--AGCuCAGCCU-GCAGC- -5'
8964 3' -60 NC_002512.2 + 29795 0.67 0.863391
Target:  5'- cCCGGCgaCCCCGcgaCGGGcgCGGGCuUCGg -3'
miRNA:   3'- -GGCCG--GGGGCua-GCUCa-GCCUGcAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.