miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 179467 0.66 0.88983
Target:  5'- gCCGGCCucuuCCUGGUCuGcuUCGGcgGCGUCGu -3'
miRNA:   3'- -GGCCGG----GGGCUAG-CucAGCC--UGCAGC- -5'
8964 3' -60 NC_002512.2 + 1624 0.66 0.88983
Target:  5'- cCCGGUCCgCGGUC-AGUCGcccccGCGUCc -3'
miRNA:   3'- -GGCCGGGgGCUAGcUCAGCc----UGCAGc -5'
8964 3' -60 NC_002512.2 + 5269 0.66 0.88983
Target:  5'- gCGGCgaCCCCGAgccCG-GUCGGcaccGCGUCc -3'
miRNA:   3'- gGCCG--GGGGCUa--GCuCAGCC----UGCAGc -5'
8964 3' -60 NC_002512.2 + 185414 0.66 0.88983
Target:  5'- cCCGGCCCCgGggCGcccUGGAgGUCu -3'
miRNA:   3'- -GGCCGGGGgCuaGCucaGCCUgCAGc -5'
8964 3' -60 NC_002512.2 + 121158 0.66 0.88983
Target:  5'- gCCGGCCgcggCCCaGggCGAGgcguucUCGGACGaCGa -3'
miRNA:   3'- -GGCCGG----GGG-CuaGCUC------AGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 129754 0.66 0.88983
Target:  5'- aCGuGCCuCCUGGUCcgccuaGAGgaccUGGACGUCGg -3'
miRNA:   3'- gGC-CGG-GGGCUAG------CUCa---GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 84494 0.66 0.88983
Target:  5'- cCCGGaCCCCgGAcgcCGcGUCGGGCucccaGUCGu -3'
miRNA:   3'- -GGCC-GGGGgCUa--GCuCAGCCUG-----CAGC- -5'
8964 3' -60 NC_002512.2 + 124599 0.66 0.88983
Target:  5'- cCCuGUCCCuCGucuUCGGcGUCGGcgGCGUCGg -3'
miRNA:   3'- -GGcCGGGG-GCu--AGCU-CAGCC--UGCAGC- -5'
8964 3' -60 NC_002512.2 + 34402 0.66 0.889205
Target:  5'- aCGGCCCUcagcucgCGGUgCGAGgagugaCGGACGUUc -3'
miRNA:   3'- gGCCGGGG-------GCUA-GCUCa-----GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 59002 0.66 0.884142
Target:  5'- gCGGCCgUCGG-CGAGgagccgcucauagaGGGCGUCGa -3'
miRNA:   3'- gGCCGGgGGCUaGCUCag------------CCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 71902 0.66 0.883501
Target:  5'- cCCGGUCgCCGAugUCGAcgcuGUCGGGCa--- -3'
miRNA:   3'- -GGCCGGgGGCU--AGCU----CAGCCUGcagc -5'
8964 3' -60 NC_002512.2 + 218083 0.66 0.883501
Target:  5'- aCCcGUCCCUGuccgUGGGgaagCGGGCGUCGc -3'
miRNA:   3'- -GGcCGGGGGCua--GCUCa---GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 213699 0.66 0.883501
Target:  5'- gCGGUCCUCGAacuggcuucuUCGAcGUCGGAgcugacgaCGUUGa -3'
miRNA:   3'- gGCCGGGGGCU----------AGCU-CAGCCU--------GCAGC- -5'
8964 3' -60 NC_002512.2 + 184247 0.66 0.883501
Target:  5'- uCgGGCCUCCccUCGuacgucaagcuGUCGGGCGUCu -3'
miRNA:   3'- -GgCCGGGGGcuAGCu----------CAGCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 128388 0.66 0.883501
Target:  5'- gCCGGCggcggaCCCCGucUCGAGccCGGugG-CGg -3'
miRNA:   3'- -GGCCG------GGGGCu-AGCUCa-GCCugCaGC- -5'
8964 3' -60 NC_002512.2 + 190147 0.66 0.883501
Target:  5'- cCUGGCCCaCCGggUGGGUCuucaccguCGUCGa -3'
miRNA:   3'- -GGCCGGG-GGCuaGCUCAGccu-----GCAGC- -5'
8964 3' -60 NC_002512.2 + 38212 0.66 0.883501
Target:  5'- uCCGGUCgCCCagcccCGGGacgCGGACGUCu -3'
miRNA:   3'- -GGCCGG-GGGcua--GCUCa--GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 119229 0.66 0.883501
Target:  5'- aCCGGCugCCCgCGGUCGAG-CGG-CGg-- -3'
miRNA:   3'- -GGCCG--GGG-GCUAGCUCaGCCuGCagc -5'
8964 3' -60 NC_002512.2 + 176791 0.66 0.883501
Target:  5'- gCUcGCCCgCGAaCGGGUCcuGGGCGUCu -3'
miRNA:   3'- -GGcCGGGgGCUaGCUCAG--CCUGCAGc -5'
8964 3' -60 NC_002512.2 + 75222 0.66 0.883501
Target:  5'- aCGGUCgCCCGAc---GUCGGACGgUCGc -3'
miRNA:   3'- gGCCGG-GGGCUagcuCAGCCUGC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.