miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 44819 0.75 0.432432
Target:  5'- gCCGaGCUCCCGGUCGAGgccCGGgucgGCGUCc -3'
miRNA:   3'- -GGC-CGGGGGCUAGCUCa--GCC----UGCAGc -5'
8964 3' -60 NC_002512.2 + 152818 0.74 0.449105
Target:  5'- gUCGGUCCCCGGUCGAaaaggaUCGGGCcUCGc -3'
miRNA:   3'- -GGCCGGGGGCUAGCUc-----AGCCUGcAGC- -5'
8964 3' -60 NC_002512.2 + 87777 0.74 0.483476
Target:  5'- uCCGGCCgCCGA-CGGGUCGGuaccggguccGCGuUCGg -3'
miRNA:   3'- -GGCCGGgGGCUaGCUCAGCC----------UGC-AGC- -5'
8964 3' -60 NC_002512.2 + 30403 0.74 0.483476
Target:  5'- gCGGCCCUgaCGGaCGGGgacgCGGGCGUCGu -3'
miRNA:   3'- gGCCGGGG--GCUaGCUCa---GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 121367 0.74 0.483476
Target:  5'- uCgGGUCCCCGGcCG-GUCGGGCGcCGg -3'
miRNA:   3'- -GgCCGGGGGCUaGCuCAGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 132687 0.74 0.492267
Target:  5'- cCCGGCCCgCCGc-CGcAGaCGGGCGUCGu -3'
miRNA:   3'- -GGCCGGG-GGCuaGC-UCaGCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 116689 0.73 0.50113
Target:  5'- cCCGGCUCCCGcUCGcGgagCGGACGgCGa -3'
miRNA:   3'- -GGCCGGGGGCuAGCuCa--GCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 24907 0.73 0.510064
Target:  5'- uCCGGUCCCCGucgcccgCGGcGUCGGGC-UCGg -3'
miRNA:   3'- -GGCCGGGGGCua-----GCU-CAGCCUGcAGC- -5'
8964 3' -60 NC_002512.2 + 118666 0.73 0.519063
Target:  5'- cCCGGCCgCCCGucAUCGucuGUCccGACGUCGg -3'
miRNA:   3'- -GGCCGG-GGGC--UAGCu--CAGc-CUGCAGC- -5'
8964 3' -60 NC_002512.2 + 121022 0.73 0.519063
Target:  5'- cCCGGUCCUucgugaCGGUCGAGgacUCGGAguCGUCGg -3'
miRNA:   3'- -GGCCGGGG------GCUAGCUC---AGCCU--GCAGC- -5'
8964 3' -60 NC_002512.2 + 136345 0.73 0.519063
Target:  5'- -aGGUCCCCGucgCGGGUCGGucgcuCGUUGa -3'
miRNA:   3'- ggCCGGGGGCua-GCUCAGCCu----GCAGC- -5'
8964 3' -60 NC_002512.2 + 123509 0.73 0.547336
Target:  5'- cUCGGCCCCCGGUCcuuccucgucgucuGguacuccgagucggcGGgcgCGGACGUCGa -3'
miRNA:   3'- -GGCCGGGGGCUAG--------------C---------------UCa--GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 135318 0.72 0.555638
Target:  5'- gCGGUCCCCGA---GGUCGG-CGUCa -3'
miRNA:   3'- gGCCGGGGGCUagcUCAGCCuGCAGc -5'
8964 3' -60 NC_002512.2 + 102328 0.72 0.583554
Target:  5'- uCgGGCCuCCCGGacgacgagcCGGGUcCGGGCGUCGg -3'
miRNA:   3'- -GgCCGG-GGGCUa--------GCUCA-GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 99649 0.72 0.583554
Target:  5'- cCCGGCgCCCGAgcCGAuccccggcaGcUCGGGCGUCGc -3'
miRNA:   3'- -GGCCGgGGGCUa-GCU---------C-AGCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 24319 0.72 0.583554
Target:  5'- gCGGuCCCCCGG-CG-GUCGGGCuGUUGa -3'
miRNA:   3'- gGCC-GGGGGCUaGCuCAGCCUG-CAGC- -5'
8964 3' -60 NC_002512.2 + 4311 0.72 0.592926
Target:  5'- cCCGGCgCCCC--UCGAgGUCGGccuCGUCGc -3'
miRNA:   3'- -GGCCG-GGGGcuAGCU-CAGCCu--GCAGC- -5'
8964 3' -60 NC_002512.2 + 215447 0.72 0.602322
Target:  5'- gUCaGCCCCCGGgagCGGGUCaucgccGGCGUCGa -3'
miRNA:   3'- -GGcCGGGGGCUa--GCUCAGc-----CUGCAGC- -5'
8964 3' -60 NC_002512.2 + 33264 0.72 0.602322
Target:  5'- gUCGGCCaCCCGggCGAaccgggagaugGUgCGGACGUCc -3'
miRNA:   3'- -GGCCGG-GGGCuaGCU-----------CA-GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 106774 0.71 0.611737
Target:  5'- cUCGGCCCgcggcaCUGGUCgGGGUCGGggucgACGUCGg -3'
miRNA:   3'- -GGCCGGG------GGCUAG-CUCAGCC-----UGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.