miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 21216 0.66 0.895966
Target:  5'- gCGGCCCCCGGgacgccgccCGGGgCGGAgaCGggggCGg -3'
miRNA:   3'- gGCCGGGGGCUa--------GCUCaGCCU--GCa---GC- -5'
8964 3' -60 NC_002512.2 + 24319 0.72 0.583554
Target:  5'- gCGGuCCCCCGG-CG-GUCGGGCuGUUGa -3'
miRNA:   3'- gGCC-GGGGGCUaGCuCAGCCUG-CAGC- -5'
8964 3' -60 NC_002512.2 + 24841 0.68 0.810516
Target:  5'- uCCgGGCCCgcggCCGGUCGGcggCGGACG-CGg -3'
miRNA:   3'- -GG-CCGGG----GGCUAGCUca-GCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 24907 0.73 0.510064
Target:  5'- uCCGGUCCCCGucgcccgCGGcGUCGGGC-UCGg -3'
miRNA:   3'- -GGCCGGGGGCua-----GCU-CAGCCUGcAGC- -5'
8964 3' -60 NC_002512.2 + 25078 0.71 0.658886
Target:  5'- gCCGcGCCCCCGGgacgCGGaccuccCGGGCGUCu -3'
miRNA:   3'- -GGC-CGGGGGCUa---GCUca----GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 25164 0.67 0.825622
Target:  5'- uCCGGCCCCCcgcccCGGgcccgccGUCGccGACGUCGc -3'
miRNA:   3'- -GGCCGGGGGcua--GCU-------CAGC--CUGCAGC- -5'
8964 3' -60 NC_002512.2 + 29795 0.67 0.863391
Target:  5'- cCCGGCgaCCCCGcgaCGGGcgCGGGCuUCGg -3'
miRNA:   3'- -GGCCG--GGGGCua-GCUCa-GCCUGcAGC- -5'
8964 3' -60 NC_002512.2 + 30403 0.74 0.483476
Target:  5'- gCGGCCCUgaCGGaCGGGgacgCGGGCGUCGu -3'
miRNA:   3'- gGCCGGGG--GCUaGCUCa---GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 30951 0.67 0.841689
Target:  5'- -aGGUCCCUGAcCGuGUUcaagaggagcaaGGACGUCGa -3'
miRNA:   3'- ggCCGGGGGCUaGCuCAG------------CCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 32100 0.69 0.723925
Target:  5'- cCCGGguguCCUCgCGGUCGAgGUCGGGauCGUCGu -3'
miRNA:   3'- -GGCC----GGGG-GCUAGCU-CAGCCU--GCAGC- -5'
8964 3' -60 NC_002512.2 + 33264 0.72 0.602322
Target:  5'- gUCGGCCaCCCGggCGAaccgggagaugGUgCGGACGUCc -3'
miRNA:   3'- -GGCCGG-GGGCuaGCU-----------CA-GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 34402 0.66 0.889205
Target:  5'- aCGGCCCUcagcucgCGGUgCGAGgagugaCGGACGUUc -3'
miRNA:   3'- gGCCGGGG-------GCUA-GCUCa-----GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 38212 0.66 0.883501
Target:  5'- uCCGGUCgCCCagcccCGGGacgCGGACGUCu -3'
miRNA:   3'- -GGCCGG-GGGcua--GCUCa--GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 40315 0.69 0.733005
Target:  5'- cCCGGCggCCCGGUCGGaagCaGACGUCGc -3'
miRNA:   3'- -GGCCGg-GGGCUAGCUca-GcCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 40777 0.69 0.75977
Target:  5'- aUCGcGCgUCCGggCGAGagaggaggaUCGGACGUCGc -3'
miRNA:   3'- -GGC-CGgGGGCuaGCUC---------AGCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 41203 0.67 0.863391
Target:  5'- gCCGugaucGUCCCCGAgacCGccgcGGUCGGACGaCGg -3'
miRNA:   3'- -GGC-----CGGGGGCUa--GC----UCAGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 44819 0.75 0.432432
Target:  5'- gCCGaGCUCCCGGUCGAGgccCGGgucgGCGUCc -3'
miRNA:   3'- -GGC-CGGGGGCUAGCUCa--GCC----UGCAGc -5'
8964 3' -60 NC_002512.2 + 45319 0.67 0.856328
Target:  5'- gCCGGCCCg----CGGGUCGGAgggcCGUCc -3'
miRNA:   3'- -GGCCGGGggcuaGCUCAGCCU----GCAGc -5'
8964 3' -60 NC_002512.2 + 47591 0.66 0.901907
Target:  5'- cCCGGUCCCUGAcggccaGGGagCGGACGg-- -3'
miRNA:   3'- -GGCCGGGGGCUag----CUCa-GCCUGCagc -5'
8964 3' -60 NC_002512.2 + 48327 0.68 0.818531
Target:  5'- aCGGaCCCCaCGAaCGAGgacaucgcgCGGGCGUgCGa -3'
miRNA:   3'- gGCC-GGGG-GCUaGCUCa--------GCCUGCA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.