miRNA display CGI


Results 1 - 20 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 1624 0.66 0.88983
Target:  5'- cCCGGUCCgCGGUC-AGUCGcccccGCGUCc -3'
miRNA:   3'- -GGCCGGGgGCUAGcUCAGCc----UGCAGc -5'
8964 3' -60 NC_002512.2 + 2108 0.68 0.777145
Target:  5'- aCGGCCgcggCUCGGUCG---CGGGCGUCGa -3'
miRNA:   3'- gGCCGG----GGGCUAGCucaGCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 2187 0.67 0.863391
Target:  5'- aCCGcGCCCCCGccgccgucGUCGucUCGGuCGcCGg -3'
miRNA:   3'- -GGC-CGGGGGC--------UAGCucAGCCuGCaGC- -5'
8964 3' -60 NC_002512.2 + 2376 0.68 0.794079
Target:  5'- gCCGGacucuCCCCCc--CGGGUCGcGGCGUCu -3'
miRNA:   3'- -GGCC-----GGGGGcuaGCUCAGC-CUGCAGc -5'
8964 3' -60 NC_002512.2 + 3657 0.67 0.826402
Target:  5'- uCCGGCCCCC--UCGcggccgacGGUCcGGAgGUCc -3'
miRNA:   3'- -GGCCGGGGGcuAGC--------UCAG-CCUgCAGc -5'
8964 3' -60 NC_002512.2 + 3894 0.67 0.849092
Target:  5'- aCCGGCgUCCCGGUCcccuugcccccGAGacCGGuCGUCGu -3'
miRNA:   3'- -GGCCG-GGGGCUAG-----------CUCa-GCCuGCAGC- -5'
8964 3' -60 NC_002512.2 + 4311 0.72 0.592926
Target:  5'- cCCGGCgCCCC--UCGAgGUCGGccuCGUCGc -3'
miRNA:   3'- -GGCCG-GGGGcuAGCU-CAGCCu--GCAGC- -5'
8964 3' -60 NC_002512.2 + 4400 0.68 0.810516
Target:  5'- gCGGCCCCguaGAUCGcGGUC-GACGgCGg -3'
miRNA:   3'- gGCCGGGGg--CUAGC-UCAGcCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 4596 0.67 0.834123
Target:  5'- gCGGCgCCgCGGgccgCGAGaCGGACGcCGa -3'
miRNA:   3'- gGCCGgGG-GCUa---GCUCaGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 5269 0.66 0.88983
Target:  5'- gCGGCgaCCCCGAgccCG-GUCGGcaccGCGUCc -3'
miRNA:   3'- gGCCG--GGGGCUa--GCuCAGCC----UGCAGc -5'
8964 3' -60 NC_002512.2 + 5854 0.75 0.424232
Target:  5'- cCCGGCggCCCCG-UCgGAGUccCGGGCGUCGu -3'
miRNA:   3'- -GGCCG--GGGGCuAG-CUCA--GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 6118 0.66 0.895966
Target:  5'- uCCGGUCCCuCGAccUCGcugucGUCGGACa--- -3'
miRNA:   3'- -GGCCGGGG-GCU--AGCu----CAGCCUGcagc -5'
8964 3' -60 NC_002512.2 + 7262 0.69 0.750935
Target:  5'- gCGGCgUCCG-UCGGGaUCGGGCG-CGa -3'
miRNA:   3'- gGCCGgGGGCuAGCUC-AGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 7708 0.66 0.876982
Target:  5'- gCCGGCCgcggCCCGG--GAGUa-GGCGUCGg -3'
miRNA:   3'- -GGCCGG----GGGCUagCUCAgcCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 8049 0.76 0.377058
Target:  5'- cCCGaggcGCCCCCG--CGGGUCGGACGcCGa -3'
miRNA:   3'- -GGC----CGGGGGCuaGCUCAGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 9579 0.67 0.856328
Target:  5'- cCCGGCCCCCGGccccccggcggcUCG-G-CGGGCa--- -3'
miRNA:   3'- -GGCCGGGGGCU------------AGCuCaGCCUGcagc -5'
8964 3' -60 NC_002512.2 + 12008 0.68 0.78567
Target:  5'- gCGGCCgCCGAUC---UCGGACG-CGc -3'
miRNA:   3'- gGCCGGgGGCUAGcucAGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 14903 0.66 0.901907
Target:  5'- aCgGGCaUCCCGA---GGUCGG-CGUCGg -3'
miRNA:   3'- -GgCCG-GGGGCUagcUCAGCCuGCAGC- -5'
8964 3' -60 NC_002512.2 + 16146 0.69 0.723925
Target:  5'- gCGGCCugcgCCCGGUCGGucaacGUCGucagcuccGACGUCGa -3'
miRNA:   3'- gGCCGG----GGGCUAGCU-----CAGC--------CUGCAGC- -5'
8964 3' -60 NC_002512.2 + 17496 0.69 0.733005
Target:  5'- gUCGGCcgccuCCUCGAucUCGAcGUCGG-CGUCGg -3'
miRNA:   3'- -GGCCG-----GGGGCU--AGCU-CAGCCuGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.