Results 1 - 20 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8964 | 3' | -60 | NC_002512.2 | + | 1624 | 0.66 | 0.88983 |
Target: 5'- cCCGGUCCgCGGUC-AGUCGcccccGCGUCc -3' miRNA: 3'- -GGCCGGGgGCUAGcUCAGCc----UGCAGc -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 2108 | 0.68 | 0.777145 |
Target: 5'- aCGGCCgcggCUCGGUCG---CGGGCGUCGa -3' miRNA: 3'- gGCCGG----GGGCUAGCucaGCCUGCAGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 2187 | 0.67 | 0.863391 |
Target: 5'- aCCGcGCCCCCGccgccgucGUCGucUCGGuCGcCGg -3' miRNA: 3'- -GGC-CGGGGGC--------UAGCucAGCCuGCaGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 2376 | 0.68 | 0.794079 |
Target: 5'- gCCGGacucuCCCCCc--CGGGUCGcGGCGUCu -3' miRNA: 3'- -GGCC-----GGGGGcuaGCUCAGC-CUGCAGc -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 3657 | 0.67 | 0.826402 |
Target: 5'- uCCGGCCCCC--UCGcggccgacGGUCcGGAgGUCc -3' miRNA: 3'- -GGCCGGGGGcuAGC--------UCAG-CCUgCAGc -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 3894 | 0.67 | 0.849092 |
Target: 5'- aCCGGCgUCCCGGUCcccuugcccccGAGacCGGuCGUCGu -3' miRNA: 3'- -GGCCG-GGGGCUAG-----------CUCa-GCCuGCAGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 4311 | 0.72 | 0.592926 |
Target: 5'- cCCGGCgCCCC--UCGAgGUCGGccuCGUCGc -3' miRNA: 3'- -GGCCG-GGGGcuAGCU-CAGCCu--GCAGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 4400 | 0.68 | 0.810516 |
Target: 5'- gCGGCCCCguaGAUCGcGGUC-GACGgCGg -3' miRNA: 3'- gGCCGGGGg--CUAGC-UCAGcCUGCaGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 4596 | 0.67 | 0.834123 |
Target: 5'- gCGGCgCCgCGGgccgCGAGaCGGACGcCGa -3' miRNA: 3'- gGCCGgGG-GCUa---GCUCaGCCUGCaGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 5269 | 0.66 | 0.88983 |
Target: 5'- gCGGCgaCCCCGAgccCG-GUCGGcaccGCGUCc -3' miRNA: 3'- gGCCG--GGGGCUa--GCuCAGCC----UGCAGc -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 5854 | 0.75 | 0.424232 |
Target: 5'- cCCGGCggCCCCG-UCgGAGUccCGGGCGUCGu -3' miRNA: 3'- -GGCCG--GGGGCuAG-CUCA--GCCUGCAGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 6118 | 0.66 | 0.895966 |
Target: 5'- uCCGGUCCCuCGAccUCGcugucGUCGGACa--- -3' miRNA: 3'- -GGCCGGGG-GCU--AGCu----CAGCCUGcagc -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 7262 | 0.69 | 0.750935 |
Target: 5'- gCGGCgUCCG-UCGGGaUCGGGCG-CGa -3' miRNA: 3'- gGCCGgGGGCuAGCUC-AGCCUGCaGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 7708 | 0.66 | 0.876982 |
Target: 5'- gCCGGCCgcggCCCGG--GAGUa-GGCGUCGg -3' miRNA: 3'- -GGCCGG----GGGCUagCUCAgcCUGCAGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 8049 | 0.76 | 0.377058 |
Target: 5'- cCCGaggcGCCCCCG--CGGGUCGGACGcCGa -3' miRNA: 3'- -GGC----CGGGGGCuaGCUCAGCCUGCaGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 9579 | 0.67 | 0.856328 |
Target: 5'- cCCGGCCCCCGGccccccggcggcUCG-G-CGGGCa--- -3' miRNA: 3'- -GGCCGGGGGCU------------AGCuCaGCCUGcagc -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 12008 | 0.68 | 0.78567 |
Target: 5'- gCGGCCgCCGAUC---UCGGACG-CGc -3' miRNA: 3'- gGCCGGgGGCUAGcucAGCCUGCaGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 14903 | 0.66 | 0.901907 |
Target: 5'- aCgGGCaUCCCGA---GGUCGG-CGUCGg -3' miRNA: 3'- -GgCCG-GGGGCUagcUCAGCCuGCAGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 16146 | 0.69 | 0.723925 |
Target: 5'- gCGGCCugcgCCCGGUCGGucaacGUCGucagcuccGACGUCGa -3' miRNA: 3'- gGCCGG----GGGCUAGCU-----CAGC--------CUGCAGC- -5' |
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8964 | 3' | -60 | NC_002512.2 | + | 17496 | 0.69 | 0.733005 |
Target: 5'- gUCGGCcgccuCCUCGAucUCGAcGUCGG-CGUCGg -3' miRNA: 3'- -GGCCG-----GGGGCU--AGCU-CAGCCuGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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