miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 227095 0.77 0.333547
Target:  5'- gCCGGCCgCCGGcCGGGUCGGGC-UCa -3'
miRNA:   3'- -GGCCGGgGGCUaGCUCAGCCUGcAGc -5'
8964 3' -60 NC_002512.2 + 226986 0.66 0.88983
Target:  5'- gUGGUCagggCC-AUCGAGUCGGACGagGa -3'
miRNA:   3'- gGCCGGg---GGcUAGCUCAGCCUGCagC- -5'
8964 3' -60 NC_002512.2 + 226515 0.67 0.841689
Target:  5'- -gGGCCCCgCGGagCGGG-CGGACgGUCu -3'
miRNA:   3'- ggCCGGGG-GCUa-GCUCaGCCUG-CAGc -5'
8964 3' -60 NC_002512.2 + 224046 0.71 0.640036
Target:  5'- -gGGCCgCCGGggaCGAcucGUCGGGCGUCu -3'
miRNA:   3'- ggCCGGgGGCUa--GCU---CAGCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 223993 0.69 0.768509
Target:  5'- gCGcGCCCCgccguccacgagCGA-CGAGUCGGACGaCGc -3'
miRNA:   3'- gGC-CGGGG------------GCUaGCUCAGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 223229 0.66 0.901907
Target:  5'- cCCGGCCggCUCGGugcacuUCGAcuccUCGGGCGUCc -3'
miRNA:   3'- -GGCCGG--GGGCU------AGCUc---AGCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 222606 0.68 0.799891
Target:  5'- uCCGGCCCCCGGggccucgcgcccgaUCccGaCGGACGcCGc -3'
miRNA:   3'- -GGCCGGGGGCU--------------AGcuCaGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 222472 0.66 0.895966
Target:  5'- gCCGGCCCUcgCGGUCGucaacguggCGGugGcCGc -3'
miRNA:   3'- -GGCCGGGG--GCUAGCuca------GCCugCaGC- -5'
8964 3' -60 NC_002512.2 + 221891 0.66 0.883501
Target:  5'- uUCuGCUCCCaGAUCGGGgaUCGGGCGcCa -3'
miRNA:   3'- -GGcCGGGGG-CUAGCUC--AGCCUGCaGc -5'
8964 3' -60 NC_002512.2 + 221570 0.7 0.677662
Target:  5'- uCCGGCUCCCGGcccugcuccgUCGAcccggagggggGUCGGugGaCGg -3'
miRNA:   3'- -GGCCGGGGGCU----------AGCU-----------CAGCCugCaGC- -5'
8964 3' -60 NC_002512.2 + 221144 0.67 0.863391
Target:  5'- aCCGcGUCCCCGucGUCGAcGggCGGGCG-CGc -3'
miRNA:   3'- -GGC-CGGGGGC--UAGCU-Ca-GCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 220667 0.67 0.863391
Target:  5'- cCUGGCCCgCCGcGUCGuGcUGGGCGaCGg -3'
miRNA:   3'- -GGCCGGG-GGC-UAGCuCaGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 219681 0.66 0.895966
Target:  5'- gCGcGCCgCCCGAggaCGAGgaGGAgCGUCGg -3'
miRNA:   3'- gGC-CGG-GGGCUa--GCUCagCCU-GCAGC- -5'
8964 3' -60 NC_002512.2 + 219480 0.68 0.794079
Target:  5'- gUCGuGCCCCUGGggCGGGUCaGACGagGa -3'
miRNA:   3'- -GGC-CGGGGGCUa-GCUCAGcCUGCagC- -5'
8964 3' -60 NC_002512.2 + 218443 0.68 0.78567
Target:  5'- cCCGGCCCCCGuccgCGGcGUccccgCGGACcgcgGUCa -3'
miRNA:   3'- -GGCCGGGGGCua--GCU-CA-----GCCUG----CAGc -5'
8964 3' -60 NC_002512.2 + 218207 0.68 0.810516
Target:  5'- uCgGGCCCCCGccUCGGGcCGcGGCGggccgCGg -3'
miRNA:   3'- -GgCCGGGGGCu-AGCUCaGC-CUGCa----GC- -5'
8964 3' -60 NC_002512.2 + 218083 0.66 0.883501
Target:  5'- aCCcGUCCCUGuccgUGGGgaagCGGGCGUCGc -3'
miRNA:   3'- -GGcCGGGGGCua--GCUCa---GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 215447 0.72 0.602322
Target:  5'- gUCaGCCCCCGGgagCGGGUCaucgccGGCGUCGa -3'
miRNA:   3'- -GGcCGGGGGCUa--GCUCAGc-----CUGCAGC- -5'
8964 3' -60 NC_002512.2 + 213699 0.66 0.883501
Target:  5'- gCGGUCCUCGAacuggcuucuUCGAcGUCGGAgcugacgaCGUUGa -3'
miRNA:   3'- gGCCGGGGGCU----------AGCU-CAGCCU--------GCAGC- -5'
8964 3' -60 NC_002512.2 + 210531 0.67 0.841689
Target:  5'- gCCGaGCCCCCGA-CG-GUCcGGcauCGUCu -3'
miRNA:   3'- -GGC-CGGGGGCUaGCuCAG-CCu--GCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.