miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 208440 1.1 0.002278
Target:  5'- gCCGGCCCCCGAUCGAGUCGGACGUCGg -3'
miRNA:   3'- -GGCCGGGGGCUAGCUCAGCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 153058 0.85 0.106433
Target:  5'- gCGGUCCCCGGUCGGGUCGG-CgGUCGa -3'
miRNA:   3'- gGCCGGGGGCUAGCUCAGCCuG-CAGC- -5'
8964 3' -60 NC_002512.2 + 152958 0.83 0.138621
Target:  5'- gCGGUCCCCGGUCGGGUCGG-CGggagCGg -3'
miRNA:   3'- gGCCGGGGGCUAGCUCAGCCuGCa---GC- -5'
8964 3' -60 NC_002512.2 + 153008 0.83 0.138621
Target:  5'- gCGGUCCCCGGUCGGGUCGG-CGggagCGg -3'
miRNA:   3'- gGCCGGGGGCUAGCUCAGCCuGCa---GC- -5'
8964 3' -60 NC_002512.2 + 112944 0.82 0.167407
Target:  5'- aUGGCgCCCCGGUCGAgccccgagucGUCGGGCGUCa -3'
miRNA:   3'- gGCCG-GGGGCUAGCU----------CAGCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 118530 0.78 0.302757
Target:  5'- uCCGGCgUCCGGgggaaacgaacgcggUCGcGUCGGACGUCGg -3'
miRNA:   3'- -GGCCGgGGGCU---------------AGCuCAGCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 153034 0.77 0.313212
Target:  5'- -nGGUCCCCGGUCGGGUCGG-CGg-- -3'
miRNA:   3'- ggCCGGGGGCUAGCUCAGCCuGCagc -5'
8964 3' -60 NC_002512.2 + 152984 0.77 0.313212
Target:  5'- -nGGUCCCCGGUCGGGUCGG-CGg-- -3'
miRNA:   3'- ggCCGGGGGCUAGCUCAGCCuGCagc -5'
8964 3' -60 NC_002512.2 + 227095 0.77 0.333547
Target:  5'- gCCGGCCgCCGGcCGGGUCGGGC-UCa -3'
miRNA:   3'- -GGCCGGgGGCUaGCUCAGCCUGcAGc -5'
8964 3' -60 NC_002512.2 + 113662 0.77 0.346918
Target:  5'- gCCGGCCgCgagggugCGcgCGGGUCGGACGUUGg -3'
miRNA:   3'- -GGCCGGgG-------GCuaGCUCAGCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 111858 0.76 0.354833
Target:  5'- aCGGCCUCCuuGGUCuuGUCGGugGUCGu -3'
miRNA:   3'- gGCCGGGGG--CUAGcuCAGCCugCAGC- -5'
8964 3' -60 NC_002512.2 + 199240 0.76 0.369546
Target:  5'- uCCGGCgcagCCCGAugUCGAGUCucuGGAUGUCGg -3'
miRNA:   3'- -GGCCGg---GGGCU--AGCUCAG---CCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 8049 0.76 0.377058
Target:  5'- cCCGaggcGCCCCCG--CGGGUCGGACGcCGa -3'
miRNA:   3'- -GGC----CGGGGGCuaGCUCAGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 94860 0.76 0.392387
Target:  5'- aCgGGCCCCCGAuccuggcgUCGuGUaGGAUGUCGg -3'
miRNA:   3'- -GgCCGGGGGCU--------AGCuCAgCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 72767 0.76 0.392387
Target:  5'- gCCGaCCCCCGAcgcCGGGagGGACGUCGc -3'
miRNA:   3'- -GGCcGGGGGCUa--GCUCagCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 112823 0.75 0.408115
Target:  5'- aCGGCCaCCCGGUUGAGggacaCGGcCGUCa -3'
miRNA:   3'- gGCCGG-GGGCUAGCUCa----GCCuGCAGc -5'
8964 3' -60 NC_002512.2 + 62268 0.75 0.420979
Target:  5'- aCGGgCaCCCGAUCGAGgaagaggucguccCGGGCGUCGc -3'
miRNA:   3'- gGCCgG-GGGCUAGCUCa------------GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 5854 0.75 0.424232
Target:  5'- cCCGGCggCCCCG-UCgGAGUccCGGGCGUCGu -3'
miRNA:   3'- -GGCCG--GGGGCuAG-CUCA--GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 189692 0.75 0.432432
Target:  5'- gCGGCCCUCGucGUCGAcGUCcgggGGAUGUCGg -3'
miRNA:   3'- gGCCGGGGGC--UAGCU-CAG----CCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 172838 0.75 0.432432
Target:  5'- cCCGGCgccCCCCGGUCG--UCGGACG-CGg -3'
miRNA:   3'- -GGCCG---GGGGCUAGCucAGCCUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.