miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 100171 0.71 0.6306
Target:  5'- -gGGCgggaucgacaaCCCCGGuuaccUCGAGUCGGACGgCGa -3'
miRNA:   3'- ggCCG-----------GGGGCU-----AGCUCAGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 118666 0.73 0.519063
Target:  5'- cCCGGCCgCCCGucAUCGucuGUCccGACGUCGg -3'
miRNA:   3'- -GGCCGG-GGGC--UAGCu--CAGc-CUGCAGC- -5'
8964 3' -60 NC_002512.2 + 121022 0.73 0.519063
Target:  5'- cCCGGUCCUucgugaCGGUCGAGgacUCGGAguCGUCGg -3'
miRNA:   3'- -GGCCGGGG------GCUAGCUC---AGCCU--GCAGC- -5'
8964 3' -60 NC_002512.2 + 123509 0.73 0.547336
Target:  5'- cUCGGCCCCCGGUCcuuccucgucgucuGguacuccgagucggcGGgcgCGGACGUCGa -3'
miRNA:   3'- -GGCCGGGGGCUAG--------------C---------------UCa--GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 135318 0.72 0.555638
Target:  5'- gCGGUCCCCGA---GGUCGG-CGUCa -3'
miRNA:   3'- gGCCGGGGGCUagcUCAGCCuGCAGc -5'
8964 3' -60 NC_002512.2 + 24319 0.72 0.583554
Target:  5'- gCGGuCCCCCGG-CG-GUCGGGCuGUUGa -3'
miRNA:   3'- gGCC-GGGGGCUaGCuCAGCCUG-CAGC- -5'
8964 3' -60 NC_002512.2 + 4311 0.72 0.592926
Target:  5'- cCCGGCgCCCC--UCGAgGUCGGccuCGUCGc -3'
miRNA:   3'- -GGCCG-GGGGcuAGCU-CAGCCu--GCAGC- -5'
8964 3' -60 NC_002512.2 + 33264 0.72 0.602322
Target:  5'- gUCGGCCaCCCGggCGAaccgggagaugGUgCGGACGUCc -3'
miRNA:   3'- -GGCCGG-GGGCuaGCU-----------CA-GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 106774 0.71 0.611737
Target:  5'- cUCGGCCCgcggcaCUGGUCgGGGUCGGggucgACGUCGg -3'
miRNA:   3'- -GGCCGGG------GGCUAG-CUCAGCC-----UGCAGC- -5'
8964 3' -60 NC_002512.2 + 136345 0.73 0.519063
Target:  5'- -aGGUCCCCGucgCGGGUCGGucgcuCGUUGa -3'
miRNA:   3'- ggCCGGGGGCua-GCUCAGCCu----GCAGC- -5'
8964 3' -60 NC_002512.2 + 24907 0.73 0.510064
Target:  5'- uCCGGUCCCCGucgcccgCGGcGUCGGGC-UCGg -3'
miRNA:   3'- -GGCCGGGGGCua-----GCU-CAGCCUGcAGC- -5'
8964 3' -60 NC_002512.2 + 116689 0.73 0.50113
Target:  5'- cCCGGCUCCCGcUCGcGgagCGGACGgCGa -3'
miRNA:   3'- -GGCCGGGGGCuAGCuCa--GCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 8049 0.76 0.377058
Target:  5'- cCCGaggcGCCCCCG--CGGGUCGGACGcCGa -3'
miRNA:   3'- -GGC----CGGGGGCuaGCUCAGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 72767 0.76 0.392387
Target:  5'- gCCGaCCCCCGAcgcCGGGagGGACGUCGc -3'
miRNA:   3'- -GGCcGGGGGCUa--GCUCagCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 94860 0.76 0.392387
Target:  5'- aCgGGCCCCCGAuccuggcgUCGuGUaGGAUGUCGg -3'
miRNA:   3'- -GgCCGGGGGCU--------AGCuCAgCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 62268 0.75 0.420979
Target:  5'- aCGGgCaCCCGAUCGAGgaagaggucguccCGGGCGUCGc -3'
miRNA:   3'- gGCCgG-GGGCUAGCUCa------------GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 5854 0.75 0.424232
Target:  5'- cCCGGCggCCCCG-UCgGAGUccCGGGCGUCGu -3'
miRNA:   3'- -GGCCG--GGGGCuAG-CUCA--GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 44819 0.75 0.432432
Target:  5'- gCCGaGCUCCCGGUCGAGgccCGGgucgGCGUCc -3'
miRNA:   3'- -GGC-CGGGGGCUAGCUCa--GCC----UGCAGc -5'
8964 3' -60 NC_002512.2 + 30403 0.74 0.483476
Target:  5'- gCGGCCCUgaCGGaCGGGgacgCGGGCGUCGu -3'
miRNA:   3'- gGCCGGGG--GCUaGCUCa---GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 121367 0.74 0.483476
Target:  5'- uCgGGUCCCCGGcCG-GUCGGGCGcCGg -3'
miRNA:   3'- -GgCCGGGGGCUaGCuCAGCCUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.