miRNA display CGI


Results 1 - 20 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 75222 0.66 0.883501
Target:  5'- aCGGUCgCCCGAc---GUCGGACGgUCGc -3'
miRNA:   3'- gGCCGG-GGGCUagcuCAGCCUGC-AGC- -5'
8964 3' -60 NC_002512.2 + 84494 0.66 0.88983
Target:  5'- cCCGGaCCCCgGAcgcCGcGUCGGGCucccaGUCGu -3'
miRNA:   3'- -GGCC-GGGGgCUa--GCuCAGCCUG-----CAGC- -5'
8964 3' -60 NC_002512.2 + 85079 0.66 0.890452
Target:  5'- gUGGCCCCCGuAggcguugaggaaccaCGAGggGGAgGUCGg -3'
miRNA:   3'- gGCCGGGGGC-Ua--------------GCUCagCCUgCAGC- -5'
8964 3' -60 NC_002512.2 + 59002 0.66 0.884142
Target:  5'- gCGGCCgUCGG-CGAGgagccgcucauagaGGGCGUCGa -3'
miRNA:   3'- gGCCGGgGGCUaGCUCag------------CCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 112642 0.66 0.876982
Target:  5'- uUGGCCgCCagGGUCGGGUCGGA-GUa- -3'
miRNA:   3'- gGCCGG-GGg-CUAGCUCAGCCUgCAgc -5'
8964 3' -60 NC_002512.2 + 34402 0.66 0.889205
Target:  5'- aCGGCCCUcagcucgCGGUgCGAGgagugaCGGACGUUc -3'
miRNA:   3'- gGCCGGGG-------GCUA-GCUCa-----GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 1624 0.66 0.88983
Target:  5'- cCCGGUCCgCGGUC-AGUCGcccccGCGUCc -3'
miRNA:   3'- -GGCCGGGgGCUAGcUCAGCc----UGCAGc -5'
8964 3' -60 NC_002512.2 + 81956 0.66 0.876982
Target:  5'- gCCGGCgcgcggugagCCCCGggCGGGUgGuGGCGgCGg -3'
miRNA:   3'- -GGCCG----------GGGGCuaGCUCAgC-CUGCaGC- -5'
8964 3' -60 NC_002512.2 + 5269 0.66 0.88983
Target:  5'- gCGGCgaCCCCGAgccCG-GUCGGcaccGCGUCc -3'
miRNA:   3'- gGCCG--GGGGCUa--GCuCAGCC----UGCAGc -5'
8964 3' -60 NC_002512.2 + 114619 0.66 0.870277
Target:  5'- cCCGGCCaggcgcucCCCGccgccuAUCGuGUaGGugGUCGg -3'
miRNA:   3'- -GGCCGG--------GGGC------UAGCuCAgCCugCAGC- -5'
8964 3' -60 NC_002512.2 + 128572 0.66 0.868914
Target:  5'- aCGGCCUCCGGgggccgacccugCGAGaggccgGGACGUCc -3'
miRNA:   3'- gGCCGGGGGCUa-----------GCUCag----CCUGCAGc -5'
8964 3' -60 NC_002512.2 + 7708 0.66 0.876982
Target:  5'- gCCGGCCgcggCCCGG--GAGUa-GGCGUCGg -3'
miRNA:   3'- -GGCCGG----GGGCUagCUCAgcCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 99425 0.66 0.876982
Target:  5'- uCC-GCCCCCGcUCcuGUCGGACGa-- -3'
miRNA:   3'- -GGcCGGGGGCuAGcuCAGCCUGCagc -5'
8964 3' -60 NC_002512.2 + 124599 0.66 0.88983
Target:  5'- cCCuGUCCCuCGucuUCGGcGUCGGcgGCGUCGg -3'
miRNA:   3'- -GGcCGGGG-GCu--AGCU-CAGCC--UGCAGC- -5'
8964 3' -60 NC_002512.2 + 129754 0.66 0.88983
Target:  5'- aCGuGCCuCCUGGUCcgccuaGAGgaccUGGACGUCGg -3'
miRNA:   3'- gGC-CGG-GGGCUAG------CUCa---GCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 153921 0.66 0.870277
Target:  5'- aCGGUUCCgUGcauUCGAGUCgagaacguucggGGACGUCGg -3'
miRNA:   3'- gGCCGGGG-GCu--AGCUCAG------------CCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 21216 0.66 0.895966
Target:  5'- gCGGCCCCCGGgacgccgccCGGGgCGGAgaCGggggCGg -3'
miRNA:   3'- gGCCGGGGGCUa--------GCUCaGCCU--GCa---GC- -5'
8964 3' -60 NC_002512.2 + 71902 0.66 0.883501
Target:  5'- cCCGGUCgCCGAugUCGAcgcuGUCGGGCa--- -3'
miRNA:   3'- -GGCCGGgGGCU--AGCU----CAGCCUGcagc -5'
8964 3' -60 NC_002512.2 + 119229 0.66 0.883501
Target:  5'- aCCGGCugCCCgCGGUCGAG-CGG-CGg-- -3'
miRNA:   3'- -GGCCG--GGG-GCUAGCUCaGCCuGCagc -5'
8964 3' -60 NC_002512.2 + 38212 0.66 0.883501
Target:  5'- uCCGGUCgCCCagcccCGGGacgCGGACGUCu -3'
miRNA:   3'- -GGCCGG-GGGcua--GCUCa--GCCUGCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.