miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 144570 0.66 0.901907
Target:  5'- aCCGGCgaCCUacGUCGAG-CGGcagGCGUCGa -3'
miRNA:   3'- -GGCCGg-GGGc-UAGCUCaGCC---UGCAGC- -5'
8964 3' -60 NC_002512.2 + 153921 0.66 0.870277
Target:  5'- aCGGUUCCgUGcauUCGAGUCgagaacguucggGGACGUCGg -3'
miRNA:   3'- gGCCGGGG-GCu--AGCUCAG------------CCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 7708 0.66 0.876982
Target:  5'- gCCGGCCgcggCCCGG--GAGUa-GGCGUCGg -3'
miRNA:   3'- -GGCCGG----GGGCUagCUCAgcCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 82396 0.66 0.895966
Target:  5'- gUGGCUCCgCGcgCGGGggagcCGGugGUCc -3'
miRNA:   3'- gGCCGGGG-GCuaGCUCa----GCCugCAGc -5'
8964 3' -60 NC_002512.2 + 38212 0.66 0.883501
Target:  5'- uCCGGUCgCCCagcccCGGGacgCGGACGUCu -3'
miRNA:   3'- -GGCCGG-GGGcua--GCUCa--GCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 119229 0.66 0.883501
Target:  5'- aCCGGCugCCCgCGGUCGAG-CGG-CGg-- -3'
miRNA:   3'- -GGCCG--GGG-GCUAGCUCaGCCuGCagc -5'
8964 3' -60 NC_002512.2 + 81956 0.66 0.876982
Target:  5'- gCCGGCgcgcggugagCCCCGggCGGGUgGuGGCGgCGg -3'
miRNA:   3'- -GGCCG----------GGGGCuaGCUCAgC-CUGCaGC- -5'
8964 3' -60 NC_002512.2 + 84494 0.66 0.88983
Target:  5'- cCCGGaCCCCgGAcgcCGcGUCGGGCucccaGUCGu -3'
miRNA:   3'- -GGCC-GGGGgCUa--GCuCAGCCUG-----CAGC- -5'
8964 3' -60 NC_002512.2 + 128572 0.66 0.868914
Target:  5'- aCGGCCUCCGGgggccgacccugCGAGaggccgGGACGUCc -3'
miRNA:   3'- gGCCGGGGGCUa-----------GCUCag----CCUGCAGc -5'
8964 3' -60 NC_002512.2 + 6118 0.66 0.895966
Target:  5'- uCCGGUCCCuCGAccUCGcugucGUCGGACa--- -3'
miRNA:   3'- -GGCCGGGG-GCU--AGCu----CAGCCUGcagc -5'
8964 3' -60 NC_002512.2 + 112642 0.66 0.876982
Target:  5'- uUGGCCgCCagGGUCGGGUCGGA-GUa- -3'
miRNA:   3'- gGCCGG-GGg-CUAGCUCAGCCUgCAgc -5'
8964 3' -60 NC_002512.2 + 101320 0.66 0.901907
Target:  5'- gUCGGCCCCCGGaggccgUCGAaggUGGACa--- -3'
miRNA:   3'- -GGCCGGGGGCU------AGCUca-GCCUGcagc -5'
8964 3' -60 NC_002512.2 + 122002 0.66 0.895966
Target:  5'- aUCGGCgCCCGGagGGGcCGGAgG-CGg -3'
miRNA:   3'- -GGCCGgGGGCUagCUCaGCCUgCaGC- -5'
8964 3' -60 NC_002512.2 + 59002 0.66 0.884142
Target:  5'- gCGGCCgUCGG-CGAGgagccgcucauagaGGGCGUCGa -3'
miRNA:   3'- gGCCGGgGGCUaGCUCag------------CCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 14903 0.66 0.901907
Target:  5'- aCgGGCaUCCCGA---GGUCGG-CGUCGg -3'
miRNA:   3'- -GgCCG-GGGGCUagcUCAGCCuGCAGC- -5'
8964 3' -60 NC_002512.2 + 223229 0.66 0.901907
Target:  5'- cCCGGCCggCUCGGugcacuUCGAcuccUCGGGCGUCc -3'
miRNA:   3'- -GGCCGG--GGGCU------AGCUc---AGCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 99425 0.66 0.876982
Target:  5'- uCC-GCCCCCGcUCcuGUCGGACGa-- -3'
miRNA:   3'- -GGcCGGGGGCuAGcuCAGCCUGCagc -5'
8964 3' -60 NC_002512.2 + 71902 0.66 0.883501
Target:  5'- cCCGGUCgCCGAugUCGAcgcuGUCGGGCa--- -3'
miRNA:   3'- -GGCCGGgGGCU--AGCU----CAGCCUGcagc -5'
8964 3' -60 NC_002512.2 + 75222 0.66 0.883501
Target:  5'- aCGGUCgCCCGAc---GUCGGACGgUCGc -3'
miRNA:   3'- gGCCGG-GGGCUagcuCAGCCUGC-AGC- -5'
8964 3' -60 NC_002512.2 + 79857 0.66 0.895966
Target:  5'- cCCGGCCCCC--UCGuccUCGGAgGagGa -3'
miRNA:   3'- -GGCCGGGGGcuAGCuc-AGCCUgCagC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.