miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 3' -60 NC_002512.2 + 223229 0.66 0.901907
Target:  5'- cCCGGCCggCUCGGugcacuUCGAcuccUCGGGCGUCc -3'
miRNA:   3'- -GGCCGG--GGGCU------AGCUc---AGCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 221891 0.66 0.883501
Target:  5'- uUCuGCUCCCaGAUCGGGgaUCGGGCGcCa -3'
miRNA:   3'- -GGcCGGGGG-CUAGCUC--AGCCUGCaGc -5'
8964 3' -60 NC_002512.2 + 143803 0.66 0.870277
Target:  5'- gCCGGCUguucuCCCGGUCcaugucgauGAGcCGGACGaUCu -3'
miRNA:   3'- -GGCCGG-----GGGCUAG---------CUCaGCCUGC-AGc -5'
8964 3' -60 NC_002512.2 + 208440 1.1 0.002278
Target:  5'- gCCGGCCCCCGAUCGAGUCGGACGUCGg -3'
miRNA:   3'- -GGCCGGGGGCUAGCUCAGCCUGCAGC- -5'
8964 3' -60 NC_002512.2 + 77157 0.66 0.895966
Target:  5'- uCCGaccGCCCCCGAagcuuaauaaaUCGAuucuucgCGGACGaUCGa -3'
miRNA:   3'- -GGC---CGGGGGCU-----------AGCUca-----GCCUGC-AGC- -5'
8964 3' -60 NC_002512.2 + 222472 0.66 0.895966
Target:  5'- gCCGGCCCUcgCGGUCGucaacguggCGGugGcCGc -3'
miRNA:   3'- -GGCCGGGG--GCUAGCuca------GCCugCaGC- -5'
8964 3' -60 NC_002512.2 + 226986 0.66 0.88983
Target:  5'- gUGGUCagggCC-AUCGAGUCGGACGagGa -3'
miRNA:   3'- gGCCGGg---GGcUAGCUCAGCCUGCagC- -5'
8964 3' -60 NC_002512.2 + 179467 0.66 0.88983
Target:  5'- gCCGGCCucuuCCUGGUCuGcuUCGGcgGCGUCGu -3'
miRNA:   3'- -GGCCGG----GGGCUAG-CucAGCC--UGCAGC- -5'
8964 3' -60 NC_002512.2 + 213699 0.66 0.883501
Target:  5'- gCGGUCCUCGAacuggcuucuUCGAcGUCGGAgcugacgaCGUUGa -3'
miRNA:   3'- gGCCGGGGGCU----------AGCU-CAGCCU--------GCAGC- -5'
8964 3' -60 NC_002512.2 + 176791 0.66 0.883501
Target:  5'- gCUcGCCCgCGAaCGGGUCcuGGGCGUCu -3'
miRNA:   3'- -GGcCGGGgGCUaGCUCAG--CCUGCAGc -5'
8964 3' -60 NC_002512.2 + 128388 0.66 0.883501
Target:  5'- gCCGGCggcggaCCCCGucUCGAGccCGGugG-CGg -3'
miRNA:   3'- -GGCCG------GGGGCu-AGCUCa-GCCugCaGC- -5'
8964 3' -60 NC_002512.2 + 185414 0.66 0.88983
Target:  5'- cCCGGCCCCgGggCGcccUGGAgGUCu -3'
miRNA:   3'- -GGCCGGGGgCuaGCucaGCCUgCAGc -5'
8964 3' -60 NC_002512.2 + 144570 0.66 0.901907
Target:  5'- aCCGGCgaCCUacGUCGAG-CGGcagGCGUCGa -3'
miRNA:   3'- -GGCCGg-GGGc-UAGCUCaGCC---UGCAGC- -5'
8964 3' -60 NC_002512.2 + 190147 0.66 0.883501
Target:  5'- cCUGGCCCaCCGggUGGGUCuucaccguCGUCGa -3'
miRNA:   3'- -GGCCGGG-GGCuaGCUCAGccu-----GCAGC- -5'
8964 3' -60 NC_002512.2 + 101320 0.66 0.901907
Target:  5'- gUCGGCCCCCGGaggccgUCGAaggUGGACa--- -3'
miRNA:   3'- -GGCCGGGGGCU------AGCUca-GCCUGcagc -5'
8964 3' -60 NC_002512.2 + 121158 0.66 0.88983
Target:  5'- gCCGGCCgcggCCCaGggCGAGgcguucUCGGACGaCGa -3'
miRNA:   3'- -GGCCGG----GGG-CuaGCUC------AGCCUGCaGC- -5'
8964 3' -60 NC_002512.2 + 184247 0.66 0.883501
Target:  5'- uCgGGCCUCCccUCGuacgucaagcuGUCGGGCGUCu -3'
miRNA:   3'- -GgCCGGGGGcuAGCu----------CAGCCUGCAGc -5'
8964 3' -60 NC_002512.2 + 188266 0.66 0.876982
Target:  5'- gCUGGCCCCCaacaccgaGGUCGAGUucaCGGcCGg-- -3'
miRNA:   3'- -GGCCGGGGG--------CUAGCUCA---GCCuGCagc -5'
8964 3' -60 NC_002512.2 + 219681 0.66 0.895966
Target:  5'- gCGcGCCgCCCGAggaCGAGgaGGAgCGUCGg -3'
miRNA:   3'- gGC-CGG-GGGCUa--GCUCagCCU-GCAGC- -5'
8964 3' -60 NC_002512.2 + 140273 0.66 0.895966
Target:  5'- uUCGGCgCCCGAgCGccccgCGGACGUUc -3'
miRNA:   3'- -GGCCGgGGGCUaGCuca--GCCUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.