Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8965 | 3' | -54.1 | NC_002512.2 | + | 126464 | 0.66 | 0.979042 |
Target: 5'- cGCCUUGuUCGCCgucgUCgucGCGuCGCCCg- -3' miRNA: 3'- -CGGAGU-AGCGGa---AGa--UGCuGUGGGag -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 99618 | 0.66 | 0.979042 |
Target: 5'- cGCgCUCGUCGCggUCgu---CGCCCUCg -3' miRNA: 3'- -CG-GAGUAGCGgaAGaugcuGUGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 184817 | 0.66 | 0.979042 |
Target: 5'- cCUUCcgCGCCggCcGCGACACCUccaUCg -3' miRNA: 3'- cGGAGuaGCGGaaGaUGCUGUGGG---AG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 154818 | 0.67 | 0.96233 |
Target: 5'- cGCCUCgacGUCGCCgcccggUCUcCccCGCCCUCc -3' miRNA: 3'- -CGGAG---UAGCGGa-----AGAuGcuGUGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 125950 | 0.66 | 0.976732 |
Target: 5'- uCCUCuucCGCCccUCgACGACacACCCUCg -3' miRNA: 3'- cGGAGua-GCGGa-AGaUGCUG--UGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 124835 | 0.66 | 0.976732 |
Target: 5'- cGCCgcCGUCGCCga--GCGAgGCCCg- -3' miRNA: 3'- -CGGa-GUAGCGGaagaUGCUgUGGGag -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 5864 | 0.66 | 0.976732 |
Target: 5'- cGCCcgCcgUGUCUUCUGCcucGGCAUUCUCg -3' miRNA: 3'- -CGGa-GuaGCGGAAGAUG---CUGUGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 197573 | 0.66 | 0.976492 |
Target: 5'- gGCUUCGUCaccgacguggucuGCCa-CUACGAgcCGCCCUCc -3' miRNA: 3'- -CGGAGUAG-------------CGGaaGAUGCU--GUGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 148691 | 0.66 | 0.976249 |
Target: 5'- cCCUCGUCGCCgcuUCgcccggaucguCGGCGCCaUCa -3' miRNA: 3'- cGGAGUAGCGGa--AGau---------GCUGUGGgAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 204405 | 0.67 | 0.974241 |
Target: 5'- cCCUCgAUCGCCUcaaccUCauacgGCGGCGCCUg- -3' miRNA: 3'- cGGAG-UAGCGGA-----AGa----UGCUGUGGGag -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 204011 | 0.67 | 0.974241 |
Target: 5'- cGCCUCuUCGgCUUCgugcgggccgACGGCgaACUCUCg -3' miRNA: 3'- -CGGAGuAGCgGAAGa---------UGCUG--UGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 142575 | 0.67 | 0.974241 |
Target: 5'- aCCUCAUCGUCU---GCGugGCcgCCUCc -3' miRNA: 3'- cGGAGUAGCGGAagaUGCugUG--GGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 94023 | 0.67 | 0.968984 |
Target: 5'- gGCCUCGUcCGCCagCUccucggcggugacgGCGACcgggaagggcgcgggACCCUCc -3' miRNA: 3'- -CGGAGUA-GCGGaaGA--------------UGCUG---------------UGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 187312 | 0.67 | 0.968687 |
Target: 5'- cGCCgc-UCGCCUc--GCGGCGCCCg- -3' miRNA: 3'- -CGGaguAGCGGAagaUGCUGUGGGag -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 186594 | 0.67 | 0.965612 |
Target: 5'- cGCCUCuacccCGaCCUguUCgACGACcCCCUCa -3' miRNA: 3'- -CGGAGua---GC-GGA--AGaUGCUGuGGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 3145 | 0.67 | 0.965612 |
Target: 5'- cGCCUC--CGCCgUCUccGgGACAgCCUCg -3' miRNA: 3'- -CGGAGuaGCGGaAGA--UgCUGUgGGAG- -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 172264 | 0.67 | 0.965612 |
Target: 5'- cGCCUCA-CGCCcgCU-CGGuCGCCCg- -3' miRNA: 3'- -CGGAGUaGCGGaaGAuGCU-GUGGGag -5' |
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8965 | 3' | -54.1 | NC_002512.2 | + | 214662 | 0.67 | 0.96233 |
Target: 5'- uCCUCccggCGCCUcg-GCGACccGCCCUCc -3' miRNA: 3'- cGGAGua--GCGGAagaUGCUG--UGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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