miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 140248 0.73 0.772466
Target:  5'- aCCUCGUCGUCUgcguggccgagUCUuCGGCGCCCg- -3'
miRNA:   3'- cGGAGUAGCGGA-----------AGAuGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 167583 0.73 0.734641
Target:  5'- cCCggUCAUcCGCCgccUCUGCGACGCCCg- -3'
miRNA:   3'- cGG--AGUA-GCGGa--AGAUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 214049 0.74 0.705334
Target:  5'- cGCCcgUCAcCGCCgucuaccUCUACGAC-CCCUCg -3'
miRNA:   3'- -CGG--AGUaGCGGa------AGAUGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 141647 0.76 0.605004
Target:  5'- cGCCgacugCGCCUUCUuaaacucgACGACGCUCUCg -3'
miRNA:   3'- -CGGagua-GCGGAAGA--------UGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 214138 0.78 0.506445
Target:  5'- gGCCUCAgCGCCUUCgACGGCAUCUa- -3'
miRNA:   3'- -CGGAGUaGCGGAAGaUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 185355 0.83 0.279409
Target:  5'- cGCCgcCAUCGCCgucgaCUGCGACACCUUCg -3'
miRNA:   3'- -CGGa-GUAGCGGaa---GAUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 208325 1.13 0.003851
Target:  5'- cGCCUCAUCGCCUUCUACGACACCCUCa -3'
miRNA:   3'- -CGGAGUAGCGGAAGAUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 197117 0.66 0.979042
Target:  5'- uCCUg--CGCCUUCgagaucauCGGCGCCCUg -3'
miRNA:   3'- cGGAguaGCGGAAGau------GCUGUGGGAg -5'
8965 3' -54.1 NC_002512.2 + 189234 0.66 0.984954
Target:  5'- cGUC-CGUCGCCgUCgcggACGuCACCgUCg -3'
miRNA:   3'- -CGGaGUAGCGGaAGa---UGCuGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 215566 0.66 0.984954
Target:  5'- cGCCUCggCGUCgUCUACGccuACaACCCg- -3'
miRNA:   3'- -CGGAGuaGCGGaAGAUGC---UG-UGGGag -5'
8965 3' -54.1 NC_002512.2 + 170065 0.66 0.984954
Target:  5'- cGCCgCGgcCGCCUUCUugGGCcugGCCUg- -3'
miRNA:   3'- -CGGaGUa-GCGGAAGAugCUG---UGGGag -5'
8965 3' -54.1 NC_002512.2 + 155557 0.66 0.984954
Target:  5'- cCUUCGUCuuccUCUUCUACGGCACCg-- -3'
miRNA:   3'- cGGAGUAGc---GGAAGAUGCUGUGGgag -5'
8965 3' -54.1 NC_002512.2 + 189197 0.66 0.983145
Target:  5'- cCCagGUCGCCgcggGCGGCAUgCUCg -3'
miRNA:   3'- cGGagUAGCGGaagaUGCUGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 218393 0.66 0.983145
Target:  5'- gGCCUCGUCGUCcUCUcCGucgucguCGUCCUCg -3'
miRNA:   3'- -CGGAGUAGCGGaAGAuGCu------GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 88955 0.66 0.981177
Target:  5'- cGCCUCGUCGCCgUCc-CGAgcCGCCgCgUCg -3'
miRNA:   3'- -CGGAGUAGCGGaAGauGCU--GUGG-G-AG- -5'
8965 3' -54.1 NC_002512.2 + 148169 0.66 0.981177
Target:  5'- uGCUgCAgcucCGCCggcaCUuCGACACCCUCc -3'
miRNA:   3'- -CGGaGUa---GCGGaa--GAuGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 161885 0.66 0.981177
Target:  5'- cGUCUCGUCGCUcccUCUccucGCGcCgGCCCUCc -3'
miRNA:   3'- -CGGAGUAGCGGa--AGA----UGCuG-UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 858 0.66 0.981177
Target:  5'- uGCCaUUAUCaGCCccaccgCUGC-ACACCCUCc -3'
miRNA:   3'- -CGG-AGUAG-CGGaa----GAUGcUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 98833 0.66 0.979263
Target:  5'- gGCCUCcggcgcggCGCCgUCcucccccgcggcccCGACGCCCUCg -3'
miRNA:   3'- -CGGAGua------GCGGaAGau------------GCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 180428 0.66 0.979042
Target:  5'- uCCUCGgugacggCGCCccggGCGGCGCCCgUCa -3'
miRNA:   3'- cGGAGUa------GCGGaagaUGCUGUGGG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.