miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 164427 0.7 0.905539
Target:  5'- cGCCaugCAggUCGCCgggaagccgCU-CGGCGCCCUCg -3'
miRNA:   3'- -CGGa--GU--AGCGGaa-------GAuGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 166048 0.67 0.96233
Target:  5'- gGUCaUCAagGUCUUCUGCGcggGCACCgUCg -3'
miRNA:   3'- -CGG-AGUagCGGAAGAUGC---UGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 166993 0.69 0.935179
Target:  5'- aCCUgCAaCGCCUUCUACGGCuucaccggcgucgcgGCCC-Cg -3'
miRNA:   3'- cGGA-GUaGCGGAAGAUGCUG---------------UGGGaG- -5'
8965 3' -54.1 NC_002512.2 + 167583 0.73 0.734641
Target:  5'- cCCggUCAUcCGCCgccUCUGCGACGCCCg- -3'
miRNA:   3'- cGG--AGUA-GCGGa--AGAUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 170065 0.66 0.984954
Target:  5'- cGCCgCGgcCGCCUUCUugGGCcugGCCUg- -3'
miRNA:   3'- -CGGaGUa-GCGGAAGAugCUG---UGGGag -5'
8965 3' -54.1 NC_002512.2 + 170866 0.71 0.833658
Target:  5'- cGCCUCGaCGCCcUCUaugaGCGGC-UCCUCg -3'
miRNA:   3'- -CGGAGUaGCGGaAGA----UGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 172264 0.67 0.965612
Target:  5'- cGCCUCA-CGCCcgCU-CGGuCGCCCg- -3'
miRNA:   3'- -CGGAGUaGCGGaaGAuGCU-GUGGGag -5'
8965 3' -54.1 NC_002512.2 + 180428 0.66 0.979042
Target:  5'- uCCUCGgugacggCGCCccggGCGGCGCCCgUCa -3'
miRNA:   3'- cGGAGUa------GCGGaagaUGCUGUGGG-AG- -5'
8965 3' -54.1 NC_002512.2 + 183316 0.7 0.879302
Target:  5'- cGCCaUCAcCGCCcgcUUCUucagccGCGAgACCCUCa -3'
miRNA:   3'- -CGG-AGUaGCGG---AAGA------UGCUgUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 184343 0.66 0.984954
Target:  5'- aGCCUCGggGUaua-UGCGACGCCC-Cg -3'
miRNA:   3'- -CGGAGUagCGgaagAUGCUGUGGGaG- -5'
8965 3' -54.1 NC_002512.2 + 184817 0.66 0.979042
Target:  5'- cCUUCcgCGCCggCcGCGACACCUccaUCg -3'
miRNA:   3'- cGGAGuaGCGGaaGaUGCUGUGGG---AG- -5'
8965 3' -54.1 NC_002512.2 + 185355 0.83 0.279409
Target:  5'- cGCCgcCAUCGCCgucgaCUGCGACACCUUCg -3'
miRNA:   3'- -CGGa-GUAGCGGaa---GAUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 185767 0.68 0.947044
Target:  5'- aCCUCGUcuaCGCCUUCUcuuuCAUCCUCg -3'
miRNA:   3'- cGGAGUA---GCGGAAGAugcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 186288 0.69 0.922839
Target:  5'- aGCCUCcgCGuCCUcgUCcGCGACGCCgUg -3'
miRNA:   3'- -CGGAGuaGC-GGA--AGaUGCUGUGGgAg -5'
8965 3' -54.1 NC_002512.2 + 186594 0.67 0.965612
Target:  5'- cGCCUCuacccCGaCCUguUCgACGACcCCCUCa -3'
miRNA:   3'- -CGGAGua---GC-GGA--AGaUGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 187312 0.67 0.968687
Target:  5'- cGCCgc-UCGCCUc--GCGGCGCCCg- -3'
miRNA:   3'- -CGGaguAGCGGAagaUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 189197 0.66 0.983145
Target:  5'- cCCagGUCGCCgcggGCGGCAUgCUCg -3'
miRNA:   3'- cGGagUAGCGGaagaUGCUGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 189234 0.66 0.984954
Target:  5'- cGUC-CGUCGCCgUCgcggACGuCACCgUCg -3'
miRNA:   3'- -CGGaGUAGCGGaAGa---UGCuGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 190325 0.68 0.942664
Target:  5'- cGCC-CGUCGCCgccCUugG-CACCgUCc -3'
miRNA:   3'- -CGGaGUAGCGGaa-GAugCuGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 191614 0.71 0.841749
Target:  5'- uCCUCggCGUCUUCUcgcGCGAU-CCCUCg -3'
miRNA:   3'- cGGAGuaGCGGAAGA---UGCUGuGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.