miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 130429 0.67 0.968687
Target:  5'- gGCCa-GUCG-CUUCUACGACGUCUUCg -3'
miRNA:   3'- -CGGagUAGCgGAAGAUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 131003 0.7 0.899314
Target:  5'- cGUC-CGUCGUCUUCgucuuCGACGCgCUCg -3'
miRNA:   3'- -CGGaGUAGCGGAAGau---GCUGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 132036 0.68 0.947044
Target:  5'- cGUCUCggucGUCGCCUccgCUucccccGCGcCGCCCUCu -3'
miRNA:   3'- -CGGAG----UAGCGGAa--GA------UGCuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 134453 0.65 0.986129
Target:  5'- gGCCUUcaacgacgaccaguGUCugcuCCUcCUgcGCGACGCCCUCg -3'
miRNA:   3'- -CGGAG--------------UAGc---GGAaGA--UGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 135243 0.67 0.965612
Target:  5'- cGCCUCGagGCCgucgUCcGCGcCGCgCUCg -3'
miRNA:   3'- -CGGAGUagCGGa---AGaUGCuGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 140248 0.73 0.772466
Target:  5'- aCCUCGUCGUCUgcguggccgagUCUuCGGCGCCCg- -3'
miRNA:   3'- cGGAGUAGCGGA-----------AGAuGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 140435 0.68 0.955128
Target:  5'- cGCgUCGcUCGCCUUC--CGACACagCUCg -3'
miRNA:   3'- -CGgAGU-AGCGGAAGauGCUGUGg-GAG- -5'
8965 3' -54.1 NC_002512.2 + 140689 0.73 0.763171
Target:  5'- uGCgUCAUCGgCUaCaGCGGCACCUUCg -3'
miRNA:   3'- -CGgAGUAGCgGAaGaUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 140838 0.67 0.96233
Target:  5'- uCCUCGuUCGCCaccgACGAgAUCCUCg -3'
miRNA:   3'- cGGAGU-AGCGGaagaUGCUgUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 141647 0.76 0.605004
Target:  5'- cGCCgacugCGCCUUCUuaaacucgACGACGCUCUCg -3'
miRNA:   3'- -CGGagua-GCGGAAGA--------UGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 142048 0.68 0.947044
Target:  5'- cGCCUCggCGCaUUUCgccuCGGC-CCCUCc -3'
miRNA:   3'- -CGGAGuaGCG-GAAGau--GCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 142575 0.67 0.974241
Target:  5'- aCCUCAUCGUCU---GCGugGCcgCCUCc -3'
miRNA:   3'- cGGAGUAGCGGAagaUGCugUG--GGAG- -5'
8965 3' -54.1 NC_002512.2 + 143538 0.72 0.825389
Target:  5'- gGCCUCGUCGCCgUCgGCGGCcgcGCgUCUCc -3'
miRNA:   3'- -CGGAGUAGCGGaAGaUGCUG---UG-GGAG- -5'
8965 3' -54.1 NC_002512.2 + 147601 0.7 0.892864
Target:  5'- cGCC-CGUCGCCU----CGACccgACCCUCg -3'
miRNA:   3'- -CGGaGUAGCGGAagauGCUG---UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 148169 0.66 0.981177
Target:  5'- uGCUgCAgcucCGCCggcaCUuCGACACCCUCc -3'
miRNA:   3'- -CGGaGUa---GCGGaa--GAuGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 148691 0.66 0.976249
Target:  5'- cCCUCGUCGCCgcuUCgcccggaucguCGGCGCCaUCa -3'
miRNA:   3'- cGGAGUAGCGGa--AGau---------GCUGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 154818 0.67 0.96233
Target:  5'- cGCCUCgacGUCGCCgcccggUCUcCccCGCCCUCc -3'
miRNA:   3'- -CGGAG---UAGCGGa-----AGAuGcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 155557 0.66 0.984954
Target:  5'- cCUUCGUCuuccUCUUCUACGGCACCg-- -3'
miRNA:   3'- cGGAGUAGc---GGAAGAUGCUGUGGgag -5'
8965 3' -54.1 NC_002512.2 + 158213 0.66 0.983887
Target:  5'- cGCCUCGUCGCCgugUUCUcCGAUagaugugcgggaggaAUCCg- -3'
miRNA:   3'- -CGGAGUAGCGG---AAGAuGCUG---------------UGGGag -5'
8965 3' -54.1 NC_002512.2 + 161885 0.66 0.981177
Target:  5'- cGUCUCGUCGCUcccUCUccucGCGcCgGCCCUCc -3'
miRNA:   3'- -CGGAGUAGCGGa--AGA----UGCuG-UGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.