miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 204011 0.67 0.974241
Target:  5'- cGCCUCuUCGgCUUCgugcgggccgACGGCgaACUCUCg -3'
miRNA:   3'- -CGGAGuAGCgGAAGa---------UGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 142575 0.67 0.974241
Target:  5'- aCCUCAUCGUCU---GCGugGCcgCCUCc -3'
miRNA:   3'- cGGAGUAGCGGAagaUGCugUG--GGAG- -5'
8965 3' -54.1 NC_002512.2 + 2007 0.67 0.965612
Target:  5'- cGCCcgCGUCGCCUgagcCGGCACCa-- -3'
miRNA:   3'- -CGGa-GUAGCGGAagauGCUGUGGgag -5'
8965 3' -54.1 NC_002512.2 + 126576 0.67 0.974241
Target:  5'- gGCCUCGgcCGuCCUgucCUACGACGgccggcUCCUCa -3'
miRNA:   3'- -CGGAGUa-GC-GGAa--GAUGCUGU------GGGAG- -5'
8965 3' -54.1 NC_002512.2 + 86162 0.67 0.971283
Target:  5'- cGCCUcCGagGCCcugCUGCGggagcuggaggucGCGCCCUCc -3'
miRNA:   3'- -CGGA-GUagCGGaa-GAUGC-------------UGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 130429 0.67 0.968687
Target:  5'- gGCCa-GUCG-CUUCUACGACGUCUUCg -3'
miRNA:   3'- -CGGagUAGCgGAAGAUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 106914 0.67 0.965612
Target:  5'- cGCCUCuuccUCGUCcUCgucgaGCGACACCUcgUCg -3'
miRNA:   3'- -CGGAGu---AGCGGaAGa----UGCUGUGGG--AG- -5'
8965 3' -54.1 NC_002512.2 + 135243 0.67 0.965612
Target:  5'- cGCCUCGagGCCgucgUCcGCGcCGCgCUCg -3'
miRNA:   3'- -CGGAGUagCGGa---AGaUGCuGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 140838 0.67 0.96233
Target:  5'- uCCUCGuUCGCCaccgACGAgAUCCUCg -3'
miRNA:   3'- cGGAGU-AGCGGaagaUGCUgUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 125031 0.67 0.96233
Target:  5'- gGCCgagGUCGCCgugagggACGAUACCUUCc -3'
miRNA:   3'- -CGGag-UAGCGGaaga---UGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 85967 0.67 0.96233
Target:  5'- -gCUCGUCGUCg---GCGAguuCGCCCUCu -3'
miRNA:   3'- cgGAGUAGCGGaagaUGCU---GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 185767 0.68 0.947044
Target:  5'- aCCUCGUcuaCGCCUUCUcuuuCAUCCUCg -3'
miRNA:   3'- cGGAGUA---GCGGAAGAugcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 10177 0.68 0.955128
Target:  5'- cGCCUCucgCGCCccgagCgcCGACGCuCCUCc -3'
miRNA:   3'- -CGGAGua-GCGGaa---GauGCUGUG-GGAG- -5'
8965 3' -54.1 NC_002512.2 + 132036 0.68 0.947044
Target:  5'- cGUCUCggucGUCGCCUccgCUucccccGCGcCGCCCUCu -3'
miRNA:   3'- -CGGAG----UAGCGGAa--GA------UGCuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 190325 0.68 0.942664
Target:  5'- cGCC-CGUCGCCgccCUugG-CACCgUCc -3'
miRNA:   3'- -CGGaGUAGCGGaa-GAugCuGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 207533 0.68 0.958837
Target:  5'- gGCCgCGUCcuCCcgCUGCGACuccuCCCUCg -3'
miRNA:   3'- -CGGaGUAGc-GGaaGAUGCUGu---GGGAG- -5'
8965 3' -54.1 NC_002512.2 + 219393 0.68 0.955128
Target:  5'- uGCCUCcgcugGUCgGCCcgCcGCGACGCCCa- -3'
miRNA:   3'- -CGGAG-----UAG-CGGaaGaUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 192630 0.68 0.955128
Target:  5'- gGCCUCA---CCUUCUACGGCAacggCUCg -3'
miRNA:   3'- -CGGAGUagcGGAAGAUGCUGUgg--GAG- -5'
8965 3' -54.1 NC_002512.2 + 140435 0.68 0.955128
Target:  5'- cGCgUCGcUCGCCUUC--CGACACagCUCg -3'
miRNA:   3'- -CGgAGU-AGCGGAAGauGCUGUGg-GAG- -5'
8965 3' -54.1 NC_002512.2 + 142048 0.68 0.947044
Target:  5'- cGCCUCggCGCaUUUCgccuCGGC-CCCUCc -3'
miRNA:   3'- -CGGAGuaGCG-GAAGau--GCUGuGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.