miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 180428 0.66 0.979042
Target:  5'- uCCUCGgugacggCGCCccggGCGGCGCCCgUCa -3'
miRNA:   3'- cGGAGUa------GCGGaagaUGCUGUGGG-AG- -5'
8965 3' -54.1 NC_002512.2 + 858 0.66 0.981177
Target:  5'- uGCCaUUAUCaGCCccaccgCUGC-ACACCCUCc -3'
miRNA:   3'- -CGG-AGUAG-CGGaa----GAUGcUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 148169 0.66 0.981177
Target:  5'- uGCUgCAgcucCGCCggcaCUuCGACACCCUCc -3'
miRNA:   3'- -CGGaGUa---GCGGaa--GAuGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 88955 0.66 0.981177
Target:  5'- cGCCUCGUCGCCgUCc-CGAgcCGCCgCgUCg -3'
miRNA:   3'- -CGGAGUAGCGGaAGauGCU--GUGG-G-AG- -5'
8965 3' -54.1 NC_002512.2 + 161885 0.66 0.981177
Target:  5'- cGUCUCGUCGCUcccUCUccucGCGcCgGCCCUCc -3'
miRNA:   3'- -CGGAGUAGCGGa--AGA----UGCuG-UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 218393 0.66 0.983145
Target:  5'- gGCCUCGUCGUCcUCUcCGucgucguCGUCCUCg -3'
miRNA:   3'- -CGGAGUAGCGGaAGAuGCu------GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 189197 0.66 0.983145
Target:  5'- cCCagGUCGCCgcggGCGGCAUgCUCg -3'
miRNA:   3'- cGGagUAGCGGaagaUGCUGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 125950 0.66 0.976732
Target:  5'- uCCUCuucCGCCccUCgACGACacACCCUCg -3'
miRNA:   3'- cGGAGua-GCGGa-AGaUGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 124835 0.66 0.976732
Target:  5'- cGCCgcCGUCGCCga--GCGAgGCCCg- -3'
miRNA:   3'- -CGGa-GUAGCGGaagaUGCUgUGGGag -5'
8965 3' -54.1 NC_002512.2 + 204405 0.67 0.974241
Target:  5'- cCCUCgAUCGCCUcaaccUCauacgGCGGCGCCUg- -3'
miRNA:   3'- cGGAG-UAGCGGA-----AGa----UGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 85967 0.67 0.96233
Target:  5'- -gCUCGUCGUCg---GCGAguuCGCCCUCu -3'
miRNA:   3'- cgGAGUAGCGGaagaUGCU---GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 125031 0.67 0.96233
Target:  5'- gGCCgagGUCGCCgugagggACGAUACCUUCc -3'
miRNA:   3'- -CGGag-UAGCGGaaga---UGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 34872 0.67 0.973982
Target:  5'- cGCCgUCGUCGCCgccgCcGgGACcgccgucGCCCUCu -3'
miRNA:   3'- -CGG-AGUAGCGGaa--GaUgCUG-------UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 140838 0.67 0.96233
Target:  5'- uCCUCGuUCGCCaccgACGAgAUCCUCg -3'
miRNA:   3'- cGGAGU-AGCGGaagaUGCUgUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 135243 0.67 0.965612
Target:  5'- cGCCUCGagGCCgucgUCcGCGcCGCgCUCg -3'
miRNA:   3'- -CGGAGUagCGGa---AGaUGCuGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 2007 0.67 0.965612
Target:  5'- cGCCcgCGUCGCCUgagcCGGCACCa-- -3'
miRNA:   3'- -CGGa-GUAGCGGAagauGCUGUGGgag -5'
8965 3' -54.1 NC_002512.2 + 106914 0.67 0.965612
Target:  5'- cGCCUCuuccUCGUCcUCgucgaGCGACACCUcgUCg -3'
miRNA:   3'- -CGGAGu---AGCGGaAGa----UGCUGUGGG--AG- -5'
8965 3' -54.1 NC_002512.2 + 130429 0.67 0.968687
Target:  5'- gGCCa-GUCG-CUUCUACGACGUCUUCg -3'
miRNA:   3'- -CGGagUAGCgGAAGAUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 86162 0.67 0.971283
Target:  5'- cGCCUcCGagGCCcugCUGCGggagcuggaggucGCGCCCUCc -3'
miRNA:   3'- -CGGA-GUagCGGaa-GAUGC-------------UGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 126576 0.67 0.974241
Target:  5'- gGCCUCGgcCGuCCUgucCUACGACGgccggcUCCUCa -3'
miRNA:   3'- -CGGAGUa-GC-GGAa--GAUGCUGU------GGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.