miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 96865 0.66 0.979917
Target:  5'- -gCUCGUCGUCUUCUcccaguucuccgucgGCGGCcaugGCCCg- -3'
miRNA:   3'- cgGAGUAGCGGAAGA---------------UGCUG----UGGGag -5'
8965 3' -54.1 NC_002512.2 + 98833 0.66 0.979263
Target:  5'- gGCCUCcggcgcggCGCCgUCcucccccgcggcccCGACGCCCUCg -3'
miRNA:   3'- -CGGAGua------GCGGaAGau------------GCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 99618 0.66 0.979042
Target:  5'- cGCgCUCGUCGCggUCgu---CGCCCUCg -3'
miRNA:   3'- -CG-GAGUAGCGgaAGaugcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 102310 0.66 0.984428
Target:  5'- cGCCUaCAUCGCCgagcggCUgggccggcuccgguACGACAagcgcgUCCUCg -3'
miRNA:   3'- -CGGA-GUAGCGGaa----GA--------------UGCUGU------GGGAG- -5'
8965 3' -54.1 NC_002512.2 + 104935 0.66 0.976732
Target:  5'- gGCCUCcUCGuCCggcgUCggcGCGGCGCcggCCUCg -3'
miRNA:   3'- -CGGAGuAGC-GGa---AGa--UGCUGUG---GGAG- -5'
8965 3' -54.1 NC_002512.2 + 106914 0.67 0.965612
Target:  5'- cGCCUCuuccUCGUCcUCgucgaGCGACACCUcgUCg -3'
miRNA:   3'- -CGGAGu---AGCGGaAGa----UGCUGUGGG--AG- -5'
8965 3' -54.1 NC_002512.2 + 107216 0.72 0.790684
Target:  5'- gGCC-CcUCGCCgucaccuggUUCUGCGGCGCCgUCa -3'
miRNA:   3'- -CGGaGuAGCGG---------AAGAUGCUGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 107572 0.71 0.864885
Target:  5'- cGCCUCAgggccacguUCGCCUUCUuggucACGACgACCa-- -3'
miRNA:   3'- -CGGAGU---------AGCGGAAGA-----UGCUG-UGGgag -5'
8965 3' -54.1 NC_002512.2 + 108172 0.7 0.899314
Target:  5'- cGCCgg--CGCCUUCUGCGGCGuuCa- -3'
miRNA:   3'- -CGGaguaGCGGAAGAUGCUGUggGag -5'
8965 3' -54.1 NC_002512.2 + 112085 0.66 0.983145
Target:  5'- aGCC-CGUCGCCUg--GCGG-ACCCa- -3'
miRNA:   3'- -CGGaGUAGCGGAagaUGCUgUGGGag -5'
8965 3' -54.1 NC_002512.2 + 115982 0.69 0.922839
Target:  5'- cGCCUCGUcgaCGUCUUCUGCGccugcaacCGCUUUCg -3'
miRNA:   3'- -CGGAGUA---GCGGAAGAUGCu-------GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 122704 0.72 0.81695
Target:  5'- uGCCcgugcaCGUCGUCUUCaACcagGACACCCUCu -3'
miRNA:   3'- -CGGa-----GUAGCGGAAGaUG---CUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 124029 0.71 0.841749
Target:  5'- cGCCUgCGUccuguaCGCCcugaUCgACGGCACCCUCg -3'
miRNA:   3'- -CGGA-GUA------GCGGa---AGaUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 124835 0.66 0.976732
Target:  5'- cGCCgcCGUCGCCga--GCGAgGCCCg- -3'
miRNA:   3'- -CGGa-GUAGCGGaagaUGCUgUGGGag -5'
8965 3' -54.1 NC_002512.2 + 125031 0.67 0.96233
Target:  5'- gGCCgagGUCGCCgugagggACGAUACCUUCc -3'
miRNA:   3'- -CGGag-UAGCGGaaga---UGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 125950 0.66 0.976732
Target:  5'- uCCUCuucCGCCccUCgACGACacACCCUCg -3'
miRNA:   3'- cGGAGua-GCGGa-AGaUGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 126464 0.66 0.979042
Target:  5'- cGCCUUGuUCGCCgucgUCgucGCGuCGCCCg- -3'
miRNA:   3'- -CGGAGU-AGCGGa---AGa--UGCuGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 126576 0.67 0.974241
Target:  5'- gGCCUCGgcCGuCCUgucCUACGACGgccggcUCCUCa -3'
miRNA:   3'- -CGGAGUa-GC-GGAa--GAUGCUGU------GGGAG- -5'
8965 3' -54.1 NC_002512.2 + 129362 0.69 0.913871
Target:  5'- aGCgUCGUCGCCUUCUGucucgugcgggugcuCGACGaccgcggCCUCc -3'
miRNA:   3'- -CGgAGUAGCGGAAGAU---------------GCUGUg------GGAG- -5'
8965 3' -54.1 NC_002512.2 + 129436 0.72 0.800472
Target:  5'- cGCgCUCuUCGCCgucgcccggaagacCUGCGAgGCCCUCg -3'
miRNA:   3'- -CG-GAGuAGCGGaa------------GAUGCUgUGGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.