miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 409 0.69 0.933215
Target:  5'- cGCCUC-UCGCCUcCU-CG-CGCCCg- -3'
miRNA:   3'- -CGGAGuAGCGGAaGAuGCuGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 858 0.66 0.981177
Target:  5'- uGCCaUUAUCaGCCccaccgCUGC-ACACCCUCc -3'
miRNA:   3'- -CGG-AGUAG-CGGaa----GAUGcUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 1218 0.67 0.96233
Target:  5'- aCCUUcUCGUCUUCUcccUGGCACCuCUCu -3'
miRNA:   3'- cGGAGuAGCGGAAGAu--GCUGUGG-GAG- -5'
8965 3' -54.1 NC_002512.2 + 1366 0.69 0.916737
Target:  5'- uCCUCGUCGCCUccgUCUcuccuccGCGu--CCCUCu -3'
miRNA:   3'- cGGAGUAGCGGA---AGA-------UGCuguGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 1957 0.72 0.799589
Target:  5'- cGCCUCGUcCGCCggcgUCggagGCGGCGCguccgucuccgCCUCg -3'
miRNA:   3'- -CGGAGUA-GCGGa---AGa---UGCUGUG-----------GGAG- -5'
8965 3' -54.1 NC_002512.2 + 2007 0.67 0.965612
Target:  5'- cGCCcgCGUCGCCUgagcCGGCACCa-- -3'
miRNA:   3'- -CGGa-GUAGCGGAagauGCUGUGGgag -5'
8965 3' -54.1 NC_002512.2 + 2200 0.69 0.922839
Target:  5'- cGCCgUCGUCGUCUcggUCgccgGCGGCGCCgccgCUCu -3'
miRNA:   3'- -CGG-AGUAGCGGA---AGa---UGCUGUGG----GAG- -5'
8965 3' -54.1 NC_002512.2 + 3145 0.67 0.965612
Target:  5'- cGCCUC--CGCCgUCUccGgGACAgCCUCg -3'
miRNA:   3'- -CGGAGuaGCGGaAGA--UgCUGUgGGAG- -5'
8965 3' -54.1 NC_002512.2 + 5864 0.66 0.976732
Target:  5'- cGCCcgCcgUGUCUUCUGCcucGGCAUUCUCg -3'
miRNA:   3'- -CGGa-GuaGCGGAAGAUG---CUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 10177 0.68 0.955128
Target:  5'- cGCCUCucgCGCCccgagCgcCGACGCuCCUCc -3'
miRNA:   3'- -CGGAGua-GCGGaa---GauGCUGUG-GGAG- -5'
8965 3' -54.1 NC_002512.2 + 21127 0.7 0.892864
Target:  5'- gGCCUUccgcuUCGgCUUCcuggGCGACugCCUCc -3'
miRNA:   3'- -CGGAGu----AGCgGAAGa---UGCUGugGGAG- -5'
8965 3' -54.1 NC_002512.2 + 24375 0.69 0.911536
Target:  5'- cGCUcgaagUCGUCGUCcUCcGCGACGCCgUCg -3'
miRNA:   3'- -CGG-----AGUAGCGGaAGaUGCUGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 34872 0.67 0.973982
Target:  5'- cGCCgUCGUCGCCgccgCcGgGACcgccgucGCCCUCu -3'
miRNA:   3'- -CGG-AGUAGCGGaa--GaUgCUG-------UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 66450 0.7 0.878601
Target:  5'- cGUCUCuccucCGCCggCUACgugagguauuguuGACACCCUCg -3'
miRNA:   3'- -CGGAGua---GCGGaaGAUG-------------CUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 85967 0.67 0.96233
Target:  5'- -gCUCGUCGUCg---GCGAguuCGCCCUCu -3'
miRNA:   3'- cgGAGUAGCGGaagaUGCU---GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 86162 0.67 0.971283
Target:  5'- cGCCUcCGagGCCcugCUGCGggagcuggaggucGCGCCCUCc -3'
miRNA:   3'- -CGGA-GUagCGGaa-GAUGC-------------UGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 88955 0.66 0.981177
Target:  5'- cGCCUCGUCGCCgUCc-CGAgcCGCCgCgUCg -3'
miRNA:   3'- -CGGAGUAGCGGaAGauGCU--GUGG-G-AG- -5'
8965 3' -54.1 NC_002512.2 + 94023 0.67 0.968984
Target:  5'- gGCCUCGUcCGCCagCUccucggcggugacgGCGACcgggaagggcgcgggACCCUCc -3'
miRNA:   3'- -CGGAGUA-GCGGaaGA--------------UGCUG---------------UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 94629 0.69 0.911536
Target:  5'- gGCCUCGUCGagcgCggCgcggACGACGgCCUCg -3'
miRNA:   3'- -CGGAGUAGCg---GaaGa---UGCUGUgGGAG- -5'
8965 3' -54.1 NC_002512.2 + 96616 0.73 0.753762
Target:  5'- cCCUCaAUCGCCUcgUCgGCGGCAUCUUCc -3'
miRNA:   3'- cGGAG-UAGCGGA--AGaUGCUGUGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.