miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 125031 0.67 0.96233
Target:  5'- gGCCgagGUCGCCgugagggACGAUACCUUCc -3'
miRNA:   3'- -CGGag-UAGCGGaaga---UGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 129362 0.69 0.913871
Target:  5'- aGCgUCGUCGCCUUCUGucucgugcgggugcuCGACGaccgcggCCUCc -3'
miRNA:   3'- -CGgAGUAGCGGAAGAU---------------GCUGUg------GGAG- -5'
8965 3' -54.1 NC_002512.2 + 1366 0.69 0.916737
Target:  5'- uCCUCGUCGCCUccgUCUcuccuccGCGu--CCCUCu -3'
miRNA:   3'- cGGAGUAGCGGA---AGA-------UGCuguGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 2200 0.69 0.922839
Target:  5'- cGCCgUCGUCGUCUcggUCgccgGCGGCGCCgccgCUCu -3'
miRNA:   3'- -CGG-AGUAGCGGA---AGa---UGCUGUGG----GAG- -5'
8965 3' -54.1 NC_002512.2 + 115982 0.69 0.922839
Target:  5'- cGCCUCGUcgaCGUCUUCUGCGccugcaacCGCUUUCg -3'
miRNA:   3'- -CGGAGUA---GCGGAAGAUGCu-------GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 190325 0.68 0.942664
Target:  5'- cGCC-CGUCGCCgccCUugG-CACCgUCc -3'
miRNA:   3'- -CGGaGUAGCGGaa-GAugCuGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 132036 0.68 0.947044
Target:  5'- cGUCUCggucGUCGCCUccgCUucccccGCGcCGCCCUCu -3'
miRNA:   3'- -CGGAG----UAGCGGAa--GA------UGCuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 10177 0.68 0.955128
Target:  5'- cGCCUCucgCGCCccgagCgcCGACGCuCCUCc -3'
miRNA:   3'- -CGGAGua-GCGGaa---GauGCUGUG-GGAG- -5'
8965 3' -54.1 NC_002512.2 + 85967 0.67 0.96233
Target:  5'- -gCUCGUCGUCg---GCGAguuCGCCCUCu -3'
miRNA:   3'- cgGAGUAGCGGaagaUGCU---GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 24375 0.69 0.911536
Target:  5'- cGCUcgaagUCGUCGUCcUCcGCGACGCCgUCg -3'
miRNA:   3'- -CGG-----AGUAGCGGaAGaUGCUGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 131003 0.7 0.899314
Target:  5'- cGUC-CGUCGUCUUCgucuuCGACGCgCUCg -3'
miRNA:   3'- -CGGaGUAGCGGAAGau---GCUGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 21127 0.7 0.892864
Target:  5'- gGCCUUccgcuUCGgCUUCcuggGCGACugCCUCc -3'
miRNA:   3'- -CGGAGu----AGCgGAAGa---UGCUGugGGAG- -5'
8965 3' -54.1 NC_002512.2 + 140689 0.73 0.763171
Target:  5'- uGCgUCAUCGgCUaCaGCGGCACCUUCg -3'
miRNA:   3'- -CGgAGUAGCgGAaGaUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 107216 0.72 0.790684
Target:  5'- gGCC-CcUCGCCgucaccuggUUCUGCGGCGCCgUCa -3'
miRNA:   3'- -CGGaGuAGCGG---------AAGAUGCUGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 1957 0.72 0.799589
Target:  5'- cGCCUCGUcCGCCggcgUCggagGCGGCGCguccgucuccgCCUCg -3'
miRNA:   3'- -CGGAGUA-GCGGa---AGa---UGCUGUG-----------GGAG- -5'
8965 3' -54.1 NC_002512.2 + 129436 0.72 0.800472
Target:  5'- cGCgCUCuUCGCCgucgcccggaagacCUGCGAgGCCCUCg -3'
miRNA:   3'- -CG-GAGuAGCGGaa------------GAUGCUgUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 122704 0.72 0.81695
Target:  5'- uGCCcgugcaCGUCGUCUUCaACcagGACACCCUCu -3'
miRNA:   3'- -CGGa-----GUAGCGGAAGaUG---CUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 124029 0.71 0.841749
Target:  5'- cGCCUgCGUccuguaCGCCcugaUCgACGGCACCCUCg -3'
miRNA:   3'- -CGGA-GUA------GCGGa---AGaUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 107572 0.71 0.864885
Target:  5'- cGCCUCAgggccacguUCGCCUUCUuggucACGACgACCa-- -3'
miRNA:   3'- -CGGAGU---------AGCGGAAGA-----UGCUG-UGGgag -5'
8965 3' -54.1 NC_002512.2 + 66450 0.7 0.878601
Target:  5'- cGUCUCuccucCGCCggCUACgugagguauuguuGACACCCUCg -3'
miRNA:   3'- -CGGAGua---GCGGaaGAUG-------------CUGUGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.