miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 208325 1.13 0.003851
Target:  5'- cGCCUCAUCGCCUUCUACGACACCCUCa -3'
miRNA:   3'- -CGGAGUAGCGGAAGAUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 185355 0.83 0.279409
Target:  5'- cGCCgcCAUCGCCgucgaCUGCGACACCUUCg -3'
miRNA:   3'- -CGGa-GUAGCGGaa---GAUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 214138 0.78 0.506445
Target:  5'- gGCCUCAgCGCCUUCgACGGCAUCUa- -3'
miRNA:   3'- -CGGAGUaGCGGAAGaUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 141647 0.76 0.605004
Target:  5'- cGCCgacugCGCCUUCUuaaacucgACGACGCUCUCg -3'
miRNA:   3'- -CGGagua-GCGGAAGA--------UGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 214049 0.74 0.705334
Target:  5'- cGCCcgUCAcCGCCgucuaccUCUACGAC-CCCUCg -3'
miRNA:   3'- -CGG--AGUaGCGGa------AGAUGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 167583 0.73 0.734641
Target:  5'- cCCggUCAUcCGCCgccUCUGCGACGCCCg- -3'
miRNA:   3'- cGG--AGUA-GCGGa--AGAUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 96616 0.73 0.753762
Target:  5'- cCCUCaAUCGCCUcgUCgGCGGCAUCUUCc -3'
miRNA:   3'- cGGAG-UAGCGGA--AGaUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 140689 0.73 0.763171
Target:  5'- uGCgUCAUCGgCUaCaGCGGCACCUUCg -3'
miRNA:   3'- -CGgAGUAGCgGAaGaUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 140248 0.73 0.772466
Target:  5'- aCCUCGUCGUCUgcguggccgagUCUuCGGCGCCCg- -3'
miRNA:   3'- cGGAGUAGCGGA-----------AGAuGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 107216 0.72 0.790684
Target:  5'- gGCC-CcUCGCCgucaccuggUUCUGCGGCGCCgUCa -3'
miRNA:   3'- -CGGaGuAGCGG---------AAGAUGCUGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 1957 0.72 0.799589
Target:  5'- cGCCUCGUcCGCCggcgUCggagGCGGCGCguccgucuccgCCUCg -3'
miRNA:   3'- -CGGAGUA-GCGGa---AGa---UGCUGUG-----------GGAG- -5'
8965 3' -54.1 NC_002512.2 + 129436 0.72 0.800472
Target:  5'- cGCgCUCuUCGCCgucgcccggaagacCUGCGAgGCCCUCg -3'
miRNA:   3'- -CG-GAGuAGCGGaa------------GAUGCUgUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 122704 0.72 0.81695
Target:  5'- uGCCcgugcaCGUCGUCUUCaACcagGACACCCUCu -3'
miRNA:   3'- -CGGa-----GUAGCGGAAGaUG---CUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 143538 0.72 0.825389
Target:  5'- gGCCUCGUCGCCgUCgGCGGCcgcGCgUCUCc -3'
miRNA:   3'- -CGGAGUAGCGGaAGaUGCUG---UG-GGAG- -5'
8965 3' -54.1 NC_002512.2 + 170866 0.71 0.833658
Target:  5'- cGCCUCGaCGCCcUCUaugaGCGGC-UCCUCg -3'
miRNA:   3'- -CGGAGUaGCGGaAGA----UGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 191614 0.71 0.841749
Target:  5'- uCCUCggCGUCUUCUcgcGCGAU-CCCUCg -3'
miRNA:   3'- cGGAGuaGCGGAAGA---UGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 124029 0.71 0.841749
Target:  5'- cGCCUgCGUccuguaCGCCcugaUCgACGGCACCCUCg -3'
miRNA:   3'- -CGGA-GUA------GCGGa---AGaUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 107572 0.71 0.864885
Target:  5'- cGCCUCAgggccacguUCGCCUUCUuggucACGACgACCa-- -3'
miRNA:   3'- -CGGAGU---------AGCGGAAGA-----UGCUG-UGGgag -5'
8965 3' -54.1 NC_002512.2 + 66450 0.7 0.878601
Target:  5'- cGUCUCuccucCGCCggCUACgugagguauuguuGACACCCUCg -3'
miRNA:   3'- -CGGAGua---GCGGaaGAUG-------------CUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 183316 0.7 0.879302
Target:  5'- cGCCaUCAcCGCCcgcUUCUucagccGCGAgACCCUCa -3'
miRNA:   3'- -CGG-AGUaGCGG---AAGA------UGCUgUGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.