miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 134453 0.65 0.986129
Target:  5'- gGCCUUcaacgacgaccaguGUCugcuCCUcCUgcGCGACGCCCUCg -3'
miRNA:   3'- -CGGAG--------------UAGc---GGAaGA--UGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 155557 0.66 0.984954
Target:  5'- cCUUCGUCuuccUCUUCUACGGCACCg-- -3'
miRNA:   3'- cGGAGUAGc---GGAAGAUGCUGUGGgag -5'
8965 3' -54.1 NC_002512.2 + 102310 0.66 0.984428
Target:  5'- cGCCUaCAUCGCCgagcggCUgggccggcuccgguACGACAagcgcgUCCUCg -3'
miRNA:   3'- -CGGA-GUAGCGGaa----GA--------------UGCUGU------GGGAG- -5'
8965 3' -54.1 NC_002512.2 + 184343 0.66 0.984954
Target:  5'- aGCCUCGggGUaua-UGCGACGCCC-Cg -3'
miRNA:   3'- -CGGAGUagCGgaagAUGCUGUGGGaG- -5'
8965 3' -54.1 NC_002512.2 + 112085 0.66 0.983145
Target:  5'- aGCC-CGUCGCCUg--GCGG-ACCCa- -3'
miRNA:   3'- -CGGaGUAGCGGAagaUGCUgUGGGag -5'
8965 3' -54.1 NC_002512.2 + 189234 0.66 0.984954
Target:  5'- cGUC-CGUCGCCgUCgcggACGuCACCgUCg -3'
miRNA:   3'- -CGGaGUAGCGGaAGa---UGCuGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 215566 0.66 0.984954
Target:  5'- cGCCUCggCGUCgUCUACGccuACaACCCg- -3'
miRNA:   3'- -CGGAGuaGCGGaAGAUGC---UG-UGGGag -5'
8965 3' -54.1 NC_002512.2 + 170065 0.66 0.984954
Target:  5'- cGCCgCGgcCGCCUUCUugGGCcugGCCUg- -3'
miRNA:   3'- -CGGaGUa-GCGGAAGAugCUG---UGGGag -5'
8965 3' -54.1 NC_002512.2 + 88955 0.66 0.981177
Target:  5'- cGCCUCGUCGCCgUCc-CGAgcCGCCgCgUCg -3'
miRNA:   3'- -CGGAGUAGCGGaAGauGCU--GUGG-G-AG- -5'
8965 3' -54.1 NC_002512.2 + 158213 0.66 0.983887
Target:  5'- cGCCUCGUCGCCgugUUCUcCGAUagaugugcgggaggaAUCCg- -3'
miRNA:   3'- -CGGAGUAGCGG---AAGAuGCUG---------------UGGGag -5'
8965 3' -54.1 NC_002512.2 + 225142 0.66 0.981177
Target:  5'- cGCCUCuucCGCCgUCgACGACgcauGCCCg- -3'
miRNA:   3'- -CGGAGua-GCGGaAGaUGCUG----UGGGag -5'
8965 3' -54.1 NC_002512.2 + 96865 0.66 0.979917
Target:  5'- -gCUCGUCGUCUUCUcccaguucuccgucgGCGGCcaugGCCCg- -3'
miRNA:   3'- cgGAGUAGCGGAAGA---------------UGCUG----UGGGag -5'
8965 3' -54.1 NC_002512.2 + 148169 0.66 0.981177
Target:  5'- uGCUgCAgcucCGCCggcaCUuCGACACCCUCc -3'
miRNA:   3'- -CGGaGUa---GCGGaa--GAuGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 218393 0.66 0.983145
Target:  5'- gGCCUCGUCGUCcUCUcCGucgucguCGUCCUCg -3'
miRNA:   3'- -CGGAGUAGCGGaAGAuGCu------GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 98833 0.66 0.979263
Target:  5'- gGCCUCcggcgcggCGCCgUCcucccccgcggcccCGACGCCCUCg -3'
miRNA:   3'- -CGGAGua------GCGGaAGau------------GCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 189197 0.66 0.983145
Target:  5'- cCCagGUCGCCgcggGCGGCAUgCUCg -3'
miRNA:   3'- cGGagUAGCGGaagaUGCUGUGgGAG- -5'
8965 3' -54.1 NC_002512.2 + 858 0.66 0.981177
Target:  5'- uGCCaUUAUCaGCCccaccgCUGC-ACACCCUCc -3'
miRNA:   3'- -CGG-AGUAG-CGGaa----GAUGcUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 180428 0.66 0.979042
Target:  5'- uCCUCGgugacggCGCCccggGCGGCGCCCgUCa -3'
miRNA:   3'- cGGAGUa------GCGGaagaUGCUGUGGG-AG- -5'
8965 3' -54.1 NC_002512.2 + 104935 0.66 0.976732
Target:  5'- gGCCUCcUCGuCCggcgUCggcGCGGCGCcggCCUCg -3'
miRNA:   3'- -CGGAGuAGC-GGa---AGa--UGCUGUG---GGAG- -5'
8965 3' -54.1 NC_002512.2 + 161885 0.66 0.981177
Target:  5'- cGUCUCGUCGCUcccUCUccucGCGcCgGCCCUCc -3'
miRNA:   3'- -CGGAGUAGCGGa--AGA----UGCuG-UGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.