miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 229812 0.69 0.933215
Target:  5'- cGCCUC-UCGCCUcCU-CG-CGCCCg- -3'
miRNA:   3'- -CGGAGuAGCGGAaGAuGCuGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 225354 0.69 0.922839
Target:  5'- cGCCUCAccgUCGCCgcuUCUccucCucCACCCUCg -3'
miRNA:   3'- -CGGAGU---AGCGGa--AGAu---GcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 225142 0.66 0.981177
Target:  5'- cGCCUCuucCGCCgUCgACGACgcauGCCCg- -3'
miRNA:   3'- -CGGAGua-GCGGaAGaUGCUG----UGGGag -5'
8965 3' -54.1 NC_002512.2 + 219393 0.68 0.955128
Target:  5'- uGCCUCcgcugGUCgGCCcgCcGCGACGCCCa- -3'
miRNA:   3'- -CGGAG-----UAG-CGGaaGaUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 218393 0.66 0.983145
Target:  5'- gGCCUCGUCGUCcUCUcCGucgucguCGUCCUCg -3'
miRNA:   3'- -CGGAGUAGCGGaAGAuGCu------GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 217190 0.7 0.899314
Target:  5'- cCCUCcgCGCCaggUUGCG-CAUCCUCg -3'
miRNA:   3'- cGGAGuaGCGGaa-GAUGCuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 215566 0.66 0.984954
Target:  5'- cGCCUCggCGUCgUCUACGccuACaACCCg- -3'
miRNA:   3'- -CGGAGuaGCGGaAGAUGC---UG-UGGGag -5'
8965 3' -54.1 NC_002512.2 + 214662 0.67 0.96233
Target:  5'- uCCUCccggCGCCUcg-GCGACccGCCCUCc -3'
miRNA:   3'- cGGAGua--GCGGAagaUGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 214138 0.78 0.506445
Target:  5'- gGCCUCAgCGCCUUCgACGGCAUCUa- -3'
miRNA:   3'- -CGGAGUaGCGGAAGaUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 214049 0.74 0.705334
Target:  5'- cGCCcgUCAcCGCCgucuaccUCUACGAC-CCCUCg -3'
miRNA:   3'- -CGG--AGUaGCGGa------AGAUGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 212989 0.68 0.946617
Target:  5'- aCCUCAUCGUCgcc-GCGGCcgucgggcccgggGCCCUCu -3'
miRNA:   3'- cGGAGUAGCGGaagaUGCUG-------------UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 208325 1.13 0.003851
Target:  5'- cGCCUCAUCGCCUUCUACGACACCCUCa -3'
miRNA:   3'- -CGGAGUAGCGGAAGAUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 207533 0.68 0.958837
Target:  5'- gGCCgCGUCcuCCcgCUGCGACuccuCCCUCg -3'
miRNA:   3'- -CGGaGUAGc-GGaaGAUGCUGu---GGGAG- -5'
8965 3' -54.1 NC_002512.2 + 204405 0.67 0.974241
Target:  5'- cCCUCgAUCGCCUcaaccUCauacgGCGGCGCCUg- -3'
miRNA:   3'- cGGAG-UAGCGGA-----AGa----UGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 204011 0.67 0.974241
Target:  5'- cGCCUCuUCGgCUUCgugcgggccgACGGCgaACUCUCg -3'
miRNA:   3'- -CGGAGuAGCgGAAGa---------UGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 197573 0.66 0.976492
Target:  5'- gGCUUCGUCaccgacguggucuGCCa-CUACGAgcCGCCCUCc -3'
miRNA:   3'- -CGGAGUAG-------------CGGaaGAUGCU--GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 197117 0.66 0.979042
Target:  5'- uCCUg--CGCCUUCgagaucauCGGCGCCCUg -3'
miRNA:   3'- cGGAguaGCGGAAGau------GCUGUGGGAg -5'
8965 3' -54.1 NC_002512.2 + 192630 0.68 0.955128
Target:  5'- gGCCUCA---CCUUCUACGGCAacggCUCg -3'
miRNA:   3'- -CGGAGUagcGGAAGAUGCUGUgg--GAG- -5'
8965 3' -54.1 NC_002512.2 + 191614 0.71 0.841749
Target:  5'- uCCUCggCGUCUUCUcgcGCGAU-CCCUCg -3'
miRNA:   3'- cGGAGuaGCGGAAGA---UGCUGuGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 190325 0.68 0.942664
Target:  5'- cGCC-CGUCGCCgccCUugG-CACCgUCc -3'
miRNA:   3'- -CGGaGUAGCGGaa-GAugCuGUGGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.